PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | POO00287.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 180aa MW: 19924.4 Da PI: 6.7808 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 82.5 | 1.1e-25 | 45 | 109 | 11 | 66 |
TCP 11 ihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........s 66 +hTk +gR R+Rl+a caar+F+L++eLG++++++tieWLl+qa p++ ++ g+ + POO00287.1 45 RHTKLNGRSCRIRLPAVCAARVFQLTRELGHKTNGQTIEWLLEQAGPSVVAALGSdvasggtvaN 109 8******************************************************5555433320 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 180 aa Download sequence |
MGSSVKIDHN SEPEVKDHSD NHKRSSKARQ KPVRENSSTK AIEYRHTKLN GRSCRIRLPA 60 VCAARVFQLT RELGHKTNGQ TIEWLLEQAG PSVVAALGSD VASGGTVANS PVSARQPPSL 120 EDPWECESKV LAKKECCGFA RVQPELEIDH LLMNFDMEFW ANEIAILQTG MAEGEDRDSK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G47620.1 | 2e-25 | TCP family protein |