PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID POO00220.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family GRAS
Protein Properties Length: 481aa    MW: 54907.2 Da    PI: 6.8388
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
POO00220.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS296.47.2e-91814791374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lLl  A  ++++d+  a + L++l + as +gd++qR++ayf+ +Laa+l++  s  ++ +  ++t+    +ee+ a+  ++ vsP+++f+h+taN
  POO00220.1  81 LIHLLLITASSINENDTVSALENLKELYKGASLNGDSVQRVVAYFADGLAAKLLGRKSPFFDMIMKEPTA----EEEFLAFMDLYRVSPYHQFAHFTAN 175
                 689****************************************************999999988887776....66777777899************** PP

        GRAS 100 qaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlvakrledle 190
                 qaI e++e+e     +++H+iDfd+s+G+QWp+L+q+L++++  ++  slRiTg+g+    s+eel+et++rL +fA+ + ++ f+f+ l+  r  +++
  POO00220.1 176 QAIIESFEKEeeknnRALHVIDFDMSYGFQWPSLIQSLSEKAtgGNRISLRITGFGR----SQEELQETENRLVSFAKGFrNLVFDFQGLLRGRSYNIN 270
                 ********9977777788***********************9744455*********....9****************9758*******9777666555 PP

        GRAS 191 .leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                  +++Lr k++E++aVnlv++l +l  ++ +++    e+L+lv+s+sP vv++veqe +++  sFl rf+e+l+y++a+fdsl+  lp es er ++E+ 
  POO00220.1 271 lINNLRKKRNETVAVNLVFHLNTLE-KTSKMS----ETLNLVRSISPSVVILVEQEGSRSPRSFLSRFMESLHYFAAMFDSLDDCLPLESAERLSIEKN 364
                 2799*****************9996.444444....59************************************************************* PP

        GRAS 289 llgreivnvva.............cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv......ksdg........yrveee.sgslv 359
                  lg+ei+ ++                  +r ++ e+le+W++r+e+ GF+ v++s+k + qaklll++       ++dg        +rv e+ +g ++
  POO00220.1 365 HLGKEIKTMLNydfdhhdhdhgdrDDDHNRCAKYERLETWKARMESHGFGGVRISSKSVIQAKLLLKMRthycplQFDGdngnggagFRVFERdEGRAI 463
                 **********82222222111111123346677799******************************985222222112222233344776554366666 PP

        GRAS 360 .lgWkdrpLvsvSaWr 374
                  lgW++r L+++S+W+
  POO00220.1 464 sLGWQNRYLLTASMWQ 479
                 7**************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    
MEAVDGDEEK LLNLSLAIVS DSGGEMKRKR NSRHNNVSTS YEGCTEGKIF LLLQMREQML  60
KLDHKRSKAT TIEDGSNGLR LIHLLLITAS SINENDTVSA LENLKELYKG ASLNGDSVQR  120
VVAYFADGLA AKLLGRKSPF FDMIMKEPTA EEEFLAFMDL YRVSPYHQFA HFTANQAIIE  180
SFEKEEEKNN RALHVIDFDM SYGFQWPSLI QSLSEKATGG NRISLRITGF GRSQEELQET  240
ENRLVSFAKG FRNLVFDFQG LLRGRSYNIN LINNLRKKRN ETVAVNLVFH LNTLEKTSKM  300
SETLNLVRSI SPSVVILVEQ EGSRSPRSFL SRFMESLHYF AAMFDSLDDC LPLESAERLS  360
IEKNHLGKEI KTMLNYDFDH HDHDHGDRDD DHNRCAKYER LETWKARMES HGFGGVRISS  420
KSVIQAKLLL KMRTHYCPLQ FDGDNGNGGA GFRVFERDEG RAISLGWQNR YLLTASMWQC  480
L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.13e-53GRAS family protein