PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID POO00147.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family bHLH
Protein Properties Length: 257aa    MW: 27838 Da    PI: 6.2867
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
POO00147.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.6e-12193238655
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +++Er RR ri +++ +L+el+P+     +k  + a++L +AveY+k Lq
  POO00147.1 193 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLDEAVEYVKCLQ 238
                 689*********************7....688****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    
MQPTSGGGST XELSRSGLAR FRSAPATWLE ALLEDEEEDP LLKPTQCLTQ LLTENSSPSP  60
ARGGSVVPFG SSSADPSSFD VGFLRQNSSP ADFLGSSDGF FSNFAIPASF DLAASSSAAN  120
MSAGSPCGSG SSSKRAREVE ALRNFSGNLS SPIKMEQGGH VSGLIDMEME KLLEESVPCR  180
VRAKRGCATH PRSIAERVRR TRISDRIRKL QELVPNMDKQ TNTADMLDEA VEYVKCLQKQ  240
IQELSEHQRK CKCVNKE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.15e-71bHLH family protein