PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON98398.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

TCP

Protein Properties

Length: 602aa MW: 65303.9 Da PI: 10.4059

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON98398.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	116	4.8e-36	206	299	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg......k 89 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el ++++ ++ +++a++ +a++++ + + PON98398.1 206 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELDELPAWNPISSSAAAVAAAANQPGVNenspavD 299 79**************************************************************444443332222222222222222222331 PP

Sequence ? help Back to Top
Protein Sequence Length: 602 aa Download sequence
MAEEPFGKRR GKRRSNTIRS QKRGSFRIRT SSSRSKKKRR SEEESKPERV LKKSQLKPIT 60 TTTTTSTKTK CPPLKAGRRD KAEPESGSSR ESSPLPSSSL PQPNPKPKPE LEPESLSYFQ 120 NLETQQAPKK QRSLHSFPSS SNLSEQRTEY ARKMGESHPH QQHHHHHHQN RATNPTTSSR 180 LGMRGVAGVG GGEIVEVQGG HIVRSTGRKD RHSKVCTAKG PRDRRVRLSA HTAIQFYDVQ 240 DRLGYDRPSK AVDWLIKKAK AAIDELDELP AWNPISSSAA AVAAAANQPG VNENSPAVDA 300 AAAIASGSHR APSTTAGMVG DGRVSDCSGG LNLQSHMVDN PNNNNTGGGG GSGFLPPSLD 360 SDAIADTIKS FFPDHPHPPP SSIQFHQSFP PDLLSRTSSQ SQDLRLSLQS FQDPILLHHH 420 HQAQAQAHQN DQALFSGTGF IGSSSAGWSD HHQSPAEMSR FQRIVAWNGG DTGNGGNDGS 480 SGFIFNSLPA APAPSPSPPL QPFFGRNQFF TQRGPLQSSS TPSVRAWIDP SSLSMADHHI 540 SHAINHHHQH QHQHHNQPSM SAMGFISGGF SPGFHIPARI QGEEEHDGIS EKPSSGSSDS 600 RH

Sequence ? help Back to Top

Protein Sequence Length: 602 aa Download sequence

MAEEPFGKRR GKRRSNTIRS QKRGSFRIRT SSSRSKKKRR SEEESKPERV LKKSQLKPIT  60
TTTTTSTKTK CPPLKAGRRD KAEPESGSSR ESSPLPSSSL PQPNPKPKPE LEPESLSYFQ  120
NLETQQAPKK QRSLHSFPSS SNLSEQRTEY ARKMGESHPH QQHHHHHHQN RATNPTTSSR  180
LGMRGVAGVG GGEIVEVQGG HIVRSTGRKD RHSKVCTAKG PRDRRVRLSA HTAIQFYDVQ  240
DRLGYDRPSK AVDWLIKKAK AAIDELDELP AWNPISSSAA AVAAAANQPG VNENSPAVDA  300
AAAIASGSHR APSTTAGMVG DGRVSDCSGG LNLQSHMVDN PNNNNTGGGG GSGFLPPSLD  360
SDAIADTIKS FFPDHPHPPP SSIQFHQSFP PDLLSRTSSQ SQDLRLSLQS FQDPILLHHH  420
HQAQAQAHQN DQALFSGTGF IGSSSAGWSD HHQSPAEMSR FQRIVAWNGG DTGNGGNDGS  480
SGFIFNSLPA APAPSPSPPL QPFFGRNQFF TQRGPLQSSS TPSVRAWIDP SSLSMADHHI  540
SHAINHHHQH QHQHHNQPSM SAMGFISGGF SPGFHIPARI QGEEEHDGIS EKPSSGSSDS  600
RH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	36	40	KKKRR
2	36	57	KKKRRSEEESKPERVLKKSQLK
3	37	58	KKKRRSEEESKPERVLKKSQLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	1e-38	TCP family protein