PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON98364.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

M-type_MADS

Protein Properties

Length: 466aa MW: 49909.6 Da PI: 8.8189

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON98364.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	46.6	4.5e-15	11	50	3	42
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n++ r+ +f kRr+g+lKK +ELS+LC++ + ++i+++ PON98364.1 11 IGNDTSRKASFKKRRAGLLKKVSELSTLCGVSAFIVIYGP 50 789***********************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence
MTRRKIRLAW IGNDTSRKAS FKKRRAGLLK KVSELSTLCG VSAFIVIYGP GESDPPTVWP 60 SVEVARQLYE RFISVPDIER CKKMVNQEGY LRERATKMAE QLRKQHRKNK EKMTCHVMRQ 120 VEAGKPLNEF ETSELGSVVW VLEEKMKEIK RRIEYYDQTV GIQPPGSLLL PPPMIPMEEL 180 LMGDQSWESF FGGIMSNLNN NNNNNIVNTN NNSLAVLRGI DQGNSVGMQV PDQRFFLGGT 240 STLGTTSLGS NYNTVQPFYG AGISSSSGGG TGNGLGFQPY VSHQSFGNNI NNNSIVTSND 300 QMGLGNFGYF GSRGGSGGFS DMGLAPQQLN LGGINNNLGG TSTDQAMGNI TGSSSTSVQN 360 PNFGLNVGSV GGVINENVGF GLHSGQGSTL GGNNNIGNNI THNNLLNQFF AFNGGNNAEV 420 VGQGQENNQG NQSNNGGSTN VNGGDTGKNM PSGLLSGASG GTYCWK

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence

MTRRKIRLAW IGNDTSRKAS FKKRRAGLLK KVSELSTLCG VSAFIVIYGP GESDPPTVWP  60
SVEVARQLYE RFISVPDIER CKKMVNQEGY LRERATKMAE QLRKQHRKNK EKMTCHVMRQ  120
VEAGKPLNEF ETSELGSVVW VLEEKMKEIK RRIEYYDQTV GIQPPGSLLL PPPMIPMEEL  180
LMGDQSWESF FGGIMSNLNN NNNNNIVNTN NNSLAVLRGI DQGNSVGMQV PDQRFFLGGT  240
STLGTTSLGS NYNTVQPFYG AGISSSSGGG TGNGLGFQPY VSHQSFGNNI NNNSIVTSND  300
QMGLGNFGYF GSRGGSGGFS DMGLAPQQLN LGGINNNLGG TSTDQAMGNI TGSSSTSVQN  360
PNFGLNVGSV GGVINENVGF GLHSGQGSTL GGNNNIGNNI THNNLLNQFF AFNGGNNAEV  420
VGQGQENNQG NQSNNGGSTN VNGGDTGKNM PSGLLSGASG GTYCWK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	25	RRKIRLAWIGNDTSRKASFKKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	1e-28	M-type_MADS family protein