PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON98323.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 216aa MW: 24423.7 Da PI: 6.8021 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.6 | 1.4e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKA+ELS+LCdae a+i+fsstgkly+yss PON98323.1 9 KKIDNITARQVTFSKRRRGLFKKAQELSTLCDAEMALIVFSSTGKLYDYSS 59 68***********************************************96 PP | |||||||
2 | K-box | 47.2 | 9.6e-17 | 88 | 166 | 19 | 97 |
K-box 19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 + +a L ke+ + +e+R+++Ge+Le+L l eL++Le+ +e +l ++ ++K++ +l++i+ l++k +l e+n+ L+++ PON98323.1 88 ERYASLSKELAEKTTEIRQMKGEKLEDLGLDELKRLEKLVEAGLGRVIETKDDRILKEINSLKRKGVQLLEDNQHLKQM 166 567788888888889*************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence |
MTRQKIEIKK IDNITARQVT FSKRRRGLFK KAQELSTLCD AEMALIVFSS TGKLYDYSSS 60 SMQKVIERHN FQSEHPAKSS QPSLDELERY ASLSKELAEK TTEIRQMKGE KLEDLGLDEL 120 KRLEKLVEAG LGRVIETKDD RILKEINSLK RKGVQLLEDN QHLKQMAGTR RVQTDIIDQG 180 QSSDSITGIC SSADLPEDFD SSDTTLKLGL PFPESS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 1e-68 | MIKC_MADS family protein |