PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON97601.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

SRS

Protein Properties

Length: 481aa MW: 48674.7 Da PI: 8.0418

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON97601.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	213.3	5.7e-66	260	421	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa...aeaaskrkrelkskkqsalsstklssaeskk 98 s t++CqdCGnqakkdC+h+RCRtCCksrgf+CathvkstWvpaa+rrerq +++a + +++ +k++r +++++s+t++s++++++ PON97601.1 260 SSTTTCQDCGNQAKKDCTHRRCRTCCKSRGFECATHVKSTWVPAARRRERQLMTTAGPGGGNGPGssgSTSGAKKPR---LIASQTTSHTSTSNTTPPR 355 57889*******************************************998888765554444222444445555...4577788899999999999 PP DUF702 99 eletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++tss lP +v+++avf+cvrv++v+dge+e+aYq++v+igGhvfkG+LydqG+e+ PON97601.1 356 SFDTSSshqdasfkesLPGQVRAPAVFKCVRVTAVEDGEDEYAYQAVVKIGGHVFKGFLYDQGVET 421 999999999****************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence
MMVMMMMIGE DKGTSSVVAT TRRLPSDSGA FADWVASSSS AAAAAAAAAA AAAAAAGRPT 60 PPDDLSLGFN AGPTAGATST SSSAMWSGPS SRPINYGLPP EMGMVGLRDV FVVAPASSFH 120 HNNHHHHHHH HNLNHDPGLI SDHSLNGSNP ATALGVGVGV GVIPLLTATP CLAPPHQQQL 180 DEASAEANAL GAASGRSRGG GIQLWQSQNQ AAAGSAAQPQ LHQHFFKKPS ILDHGNSGAG 240 GNLVIQSGGG GIVGSGSTSS STTTCQDCGN QAKKDCTHRR CRTCCKSRGF ECATHVKSTW 300 VPAARRRERQ LMTTAGPGGG NGPGSSGSTS GAKKPRLIAS QTTSHTSTSN TTPPRSFDTS 360 SSHQDASFKE SLPGQVRAPA VFKCVRVTAV EDGEDEYAYQ AVVKIGGHVF KGFLYDQGVE 420 TRDAFPNLSE LHLGGGGGGG GGGGGGRNGA SSSSPILDPS DVYAASTGGL LGGSSYGNPI 480 N

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence

MMVMMMMIGE DKGTSSVVAT TRRLPSDSGA FADWVASSSS AAAAAAAAAA AAAAAAGRPT  60
PPDDLSLGFN AGPTAGATST SSSAMWSGPS SRPINYGLPP EMGMVGLRDV FVVAPASSFH  120
HNNHHHHHHH HNLNHDPGLI SDHSLNGSNP ATALGVGVGV GVIPLLTATP CLAPPHQQQL  180
DEASAEANAL GAASGRSRGG GIQLWQSQNQ AAAGSAAQPQ LHQHFFKKPS ILDHGNSGAG  240
GNLVIQSGGG GIVGSGSTSS STTTCQDCGN QAKKDCTHRR CRTCCKSRGF ECATHVKSTW  300
VPAARRRERQ LMTTAGPGGG NGPGSSGSTS GAKKPRLIAS QTTSHTSTSN TTPPRSFDTS  360
SSHQDASFKE SLPGQVRAPA VFKCVRVTAV EDGEDEYAYQ AVVKIGGHVF KGFLYDQGVE  420
TRDAFPNLSE LHLGGGGGGG GGGGGGRNGA SSSSPILDPS DVYAASTGGL LGGSSYGNPI  480
N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.1	2e-72	SRS family protein