PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON97460.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family ARF
Protein Properties Length: 845aa    MW: 94387 Da    PI: 6.777
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON97460.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.81e-23150251199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+lt sd++++g +++ +++a+e+      + + + +++l+ +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + +++el+
  PON97460.1 150 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGENGELR 245
                 99*****************************7333.34459************************************************..449999** PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 v+v+r+
  PON97460.1 246 VGVRRS 251
                 ***985 PP
2Auxin_resp1193.7e-39276358183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha+st+++F+v+Y+Pr+s++eF+v+++++++a k+++s+GmRfkm+fe+e+++e+r++Gt++g++++dp rW++SkWr+Lk
  PON97460.1 276 AWHAISTGTMFTVYYKPRTSPAEFIVPFDQYMEANKNNYSIGMRFKMRFEGEEAPEQRFTGTIIGIEEADPKRWKDSKWRCLK 358
                 89*******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 845 aa     Download sequence    
MASSEVSVKG NSGNPMGESF SSGFADHSDA RKAAEARKEA DVAVYKELWH ACAGPLVTVP  60
REGERVFYFP QGHIEQVEAS TNQVADQQMP VYNLPPKILC QVINVELKAE PDTDEVFAQI  120
ILLPEQNQDE NAVEKVSPPP PPSRFQVHSF CKTLTASDTS THGGFSVLRR HADECLPPLD  180
MSRQPPTQEL VAKDLHGNEW RFRHIFRGQP RRHLLQSGWS VFVSSKRLVA GDAFIFLRGE  240
NGELRVGVRR SMRKQDNVPS SVISSHSMHL GVLATAWHAI STGTMFTVYY KPRTSPAEFI  300
VPFDQYMEAN KNNYSIGMRF KMRFEGEEAP EQRFTGTIIG IEEADPKRWK DSKWRCLKVR  360
WDETSTIPRP ERVSPWKIEP ALAPPALNPL PVPRSKRPRS NVVPSSPDSS VLTREGSSKV  420
TVDPSLPSAF SRVLQGQEFS TLRGNLAESN DSDTAEKSVM WPPSVDDEKI DVVSASKRYG  480
SENWVPSGRH EPTYTDLLSG FGAMADSSRV ICPSFTDQSV TPANSMRKHS LDQEGRFNLH  540
SSPRSMIPSS LSLSLDTNLK SSVQGGYQGQ GDVRYGGFDD RTILHSHRVE HPHGNWFMPP  600
PSNPHFENPS HLRELTSKPL LGQKYEAVKP KDGNCKIFGY SLILPEPSVS HRSIVDKATG  660
QMNLLPNQAH TFEFDHKSEQ VRGSKLADNP VAGIDQEKSS HTNQQHSREL QGKAQSGSTR  720
SCTKVHKQGI ALGRSVDLTK FNNYDELIAE LDQLFEFGGE LMAPKKNWLI VYTDDEGDMM  780
LVGDDPWQEF CCMVRKIFIY TREEVQKMSP GTLNSHGDGN HTVAEVMDAK EKSQPLPLSS  840
VLENY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein