PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON97288.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

bHLH

Protein Properties

Length: 624aa MW: 69296.9 Da PI: 6.7462

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON97288.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.4	5.2e-13	451	497	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI++Lq PON97288.1 451 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYINELQ 497 799*********************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 624 aa Download sequence
MKIEVGLGGG GVWNDEDKAM VAAVLGTRAF DYLISSSVTN ENLLMAVGSD ENLQNKLSDL 60 VDRPNASNFS WNYAIFWQIS RSKSGDWVLG WGDGSCREPR EGEESEATRM LNLRLEDETQ 120 QRMRKRVLQK LHNLFGGSDE DNYALGLDRV TDTEMFFLAS MYFSFPRGEG GPGKCYASGK 180 HLWLPDALKS SSDYCFRSFL AKSAGIQTIV LVPTEVGVVE LGSVRSVGES SELLQSIRSL 240 FSTQSSLMRV SKPVAVVPVM CEKRDENVHL ANSGIVERSE GVPKIFGQDL NAGNIVRPHY 300 REKLAIRKLE ERRWDMYSNG NGNGIAFSSP RNGIHGSSWP HSLQGVKQGV NPTEIYISQS 360 PGSNNIQELV NGVREDFRLN NYQPQKQVQM QIDFSGAASR STVINHRPIS AESEHSDVEA 420 SCKEERPSTA DERRPRKRGR KPANGREEPL NHVEAERQRR EKLNQRFYAL RAVVPNISKM 480 DKASLLGDAI AYINELQAKV KVMEAEREKV GSCSRDAASA AMEANNPDME NQIRVPDVDV 540 KVVNDEVIVR VSCALDSHPA SRVIQAFKEA QITVVESKFA TMNDTVFHTF VIKSEGSEQL 600 TKEKLVAAFS REANSLRTLS SVGG

Sequence ? help Back to Top

Protein Sequence Length: 624 aa Download sequence

MKIEVGLGGG GVWNDEDKAM VAAVLGTRAF DYLISSSVTN ENLLMAVGSD ENLQNKLSDL  60
VDRPNASNFS WNYAIFWQIS RSKSGDWVLG WGDGSCREPR EGEESEATRM LNLRLEDETQ  120
QRMRKRVLQK LHNLFGGSDE DNYALGLDRV TDTEMFFLAS MYFSFPRGEG GPGKCYASGK  180
HLWLPDALKS SSDYCFRSFL AKSAGIQTIV LVPTEVGVVE LGSVRSVGES SELLQSIRSL  240
FSTQSSLMRV SKPVAVVPVM CEKRDENVHL ANSGIVERSE GVPKIFGQDL NAGNIVRPHY  300
REKLAIRKLE ERRWDMYSNG NGNGIAFSSP RNGIHGSSWP HSLQGVKQGV NPTEIYISQS  360
PGSNNIQELV NGVREDFRLN NYQPQKQVQM QIDFSGAASR STVINHRPIS AESEHSDVEA  420
SCKEERPSTA DERRPRKRGR KPANGREEPL NHVEAERQRR EKLNQRFYAL RAVVPNISKM  480
DKASLLGDAI AYINELQAKV KVMEAEREKV GSCSRDAASA AMEANNPDME NQIRVPDVDV  540
KVVNDEVIVR VSCALDSHPA SRVIQAFKEA QITVVESKFA TMNDTVFHTF VIKSEGSEQL  600
TKEKLVAAFS REANSLRTLS SVGG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	433	441	RRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01260.1	0.0	bHLH family protein