PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON97275.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
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Family | LBD | ||||||||
Protein Properties | Length: 169aa MW: 19462.4 Da PI: 6.6225 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.7 | 2.7e-40 | 17 | 116 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaC++lrrkC ++Cvl+pyfp+++ +kfa vhk+FGasnv+k+++ ++ee+r+d+++++vyeA+ar+rdP+yG++g+i++lq+ +++l+++l+++ + PON97275.1 17 PCAACRMLRRKCDRNCVLSPYFPSDEIEKFAGVHKVFGASNVIKMIQMVEEEKRDDTVQAIVYEAKARLRDPIYGSAGTIFHLQRMVNELRSQLESTTA 115 7*********************************************************************************************99876 PP DUF260 100 e 100 + PON97275.1 116 Q 116 6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence |
MELTGQVPLP RSRVHQPCAA CRMLRRKCDR NCVLSPYFPS DEIEKFAGVH KVFGASNVIK 60 MIQMVEEEKR DDTVQAIVYE AKARLRDPIY GSAGTIFHLQ RMVNELRSQL ESTTAQVMEL 120 QEHRDRLLGI LMNVHYLEFD TLPTMQHVDP LFYGSNSIHD IDPPVSFFL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 7e-44 | LBD family protein |