PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON97006.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family GRAS
Protein Properties Length: 610aa    MW: 66469.6 Da    PI: 6.989
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON97006.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS340.92.2e-1042496102374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 ++ L+e+A a+s+g+ e+a+++L+rl + ++p+ ++ qR+  +++ AL++r++       ++lpp  +    s+e++a++k ++++sP++ +++ +aN 
  PON97006.1 249 KQSLMEAASAISEGKPEAASEILTRLTQVSNPRPNSEQRVLEFIASALKSRVNP-----GEILPPVMEL--FSQEHAASTKSLYDLSPCFGLGFTAANL 340
                 578**************************************************9.....5666555544..4899999********************* PP

        GRAS 101 aIleavege.....ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                 aIlea+  +     ++vH+iDfdi++G+Q+++Ll++L  Rp+g+p +l+iT+v++    + e+l+++g++L++fAe++g  fe +v  ++++++l+ ++
  PON97006.1 341 AILEATLADqssskNKVHVIDFDIGHGGQYVNLLHQL--RPNGKPvTLKITTVAD----NCEKLKSVGDQLSQFAERFGFGFELSV-RSQKISELSRDS 432
                 ****98554456679********************98..7877776*********....99************************9.9*********** PP

        GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                 L ++p+E laVn++++l+r++desvs+e++rde+L+ vk l P+vv++veqe+++n+++F++r+ e++ yy al+ds+++++p e+ +r+ vE + ++r
  PON97006.1 433 LGCEPDEPLAVNFAFKLYRMPDESVSTENPRDELLRRVKALAPRVVTLVEQELNTNTAPFMARVNETCAYYGALLDSVDSTVPMENPDRVRVEDA-VSR 530
                 ***********************************************************************************************.9** PP

        GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +i n vaceg++r+er+e ++kWr+r+++aGF++ pls+++ + +++  r ++  g++v+ee+g +++gW++r+L+++SaWr
  PON97006.1 531 KIANSVACEGRDRFERCEVFGKWRARMGMAGFESKPLSQNVRTRVSSGTRLHP--GFSVKEENGGICFGWMGRTLTVASAWR 610
                 ****************************************************9..**************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    
MQSGFTGAGG LPDFYTGGRS TIATTMNNNP SQPSPFHRSQ LPGLFLDPTT PRIARQNPIP  60
TTLIGKRTLA EFQSHQQYQP NLGLAQASYL RSVKPRTYQQ SSPISPLSPI EFSPTTTTGP  120
ESSSTSSSQR FGLPLLQHLR PQPVSAAAQG VPYVNNPVQN RVPAVDSDKK MMNHRLQELE  180
KELLDDIDEG EGDPVSAITN NSSSEWSETI QNLISPNQTQ KPVSPSPTSS SSSSSSSSVA  240
SPASSTCSKQ SLMEAASAIS EGKPEAASEI LTRLTQVSNP RPNSEQRVLE FIASALKSRV  300
NPGEILPPVM ELFSQEHAAS TKSLYDLSPC FGLGFTAANL AILEATLADQ SSSKNKVHVI  360
DFDIGHGGQY VNLLHQLRPN GKPVTLKITT VADNCEKLKS VGDQLSQFAE RFGFGFELSV  420
RSQKISELSR DSLGCEPDEP LAVNFAFKLY RMPDESVSTE NPRDELLRRV KALAPRVVTL  480
VEQELNTNTA PFMARVNETC AYYGALLDSV DSTVPMENPD RVRVEDAVSR KIANSVACEG  540
RDRFERCEVF GKWRARMGMA GFESKPLSQN VRTRVSSGTR LHPGFSVKEE NGGICFGWMG  600
RTLTVASAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-168GRAS family protein