PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON96684.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

HB-other

Protein Properties

Length: 956aa MW: 106789 Da PI: 6.0769

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON96684.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	15.4	3.1e-05	729	789	1	54
TT--SS--HHHHHHHHHHHHHSSS-..-HHHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknryp..saeereeLAkkl.....gLterqVkvWFqNrRak 54 +rkRt +++eq+e e + e+++ + +a+ ++ ++kl ++t +q k+W Nr+a+ PON96684.1 729 KRKRTIMNDEQVEMIEMALENSPDMhrNAALIQSWSDKLschgsEVTSSQLKNWLNNRKAR 789 79****************966551166779**************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 956 aa Download sequence
MRYNKEEPTT SATQAIDLIS AVKELHGLSS QELNKLLRDS ENFTIQYVTE KGSVIKIEME 60 KLAGFLPLHL IAVLMSAGRE EALSRYLLCG LRLLHSLCDL APRHAKLEQI LLDDVKLSEQ 120 LLDMVFYLLI VFGRVEQRNR DFGILPLMHS ALVACSLHLL TGFISSQWQD LAHVLLAHPK 180 VDIFMDAAFG AVCATIKFLE IKLSSQHTNF CSTSSLTAEQ VVNYLCQQCE ASLQFLQSLC 240 QQKMFRERLL RNKELCGKGG ILFLAQAILK LNVMPHFTES PRVVASVSRM KARVLSILVS 300 LCEAESISYL DEVASTPCSL DLAKSVASEV LELLKAALGR DPRRLIPCSE RNFPMGLLQL 360 NAMRLADIFS DDSNFRSYIT IYFTKVLTAI FSLPHGDFLS SWCSSELPLK EEDGSIEYDL 420 FASSGWVLDV LSSTNLQNPT SLELMAVSNS MLQASYAHQR TSLFVKVIAN LHCFVPTICE 480 EQERNLFLRK FMECLPMDPS NVLPGFSFTS DVPKAATVCR NLRSLLSHAE SLIPNFLNEE 540 DVQLLRVFYN QLQSLLMSTE YEENRVQERK CAELISWDKF AKLDLNEHNQ EAQSAGGCSS 600 PLLRKEHPNL NNRSGNLKEE MSENSAYQDM DQKYLNSEHI SQEADAVRED KCKSSMSAFG 660 GITEINKDAQ NVETSGSDTS STRGKNVADQ MDNSEFPKVG VATKESAHGR NVEEKKIETV 720 QSEEKQRRKR KRTIMNDEQV EMIEMALENS PDMHRNAALI QSWSDKLSCH GSEVTSSQLK 780 NWLNNRKARL ARTGKDVRAT PEVESSFPEK QGGPGPRSSD SPGTPGEDAS VQPNVGRDPQ 840 SITWRSSTAE NSEASPAVGP TEFLQCEQGK HVILLGAAGE EIAKGKVFQV GGKWYGKNLD 900 ELRTCVVDIL ELKVKRGTRL PHPAVSTGVS FEEAETRIGV MRVMWDSIRI FASRSK

Sequence ? help Back to Top

Protein Sequence Length: 956 aa Download sequence

MRYNKEEPTT SATQAIDLIS AVKELHGLSS QELNKLLRDS ENFTIQYVTE KGSVIKIEME  60
KLAGFLPLHL IAVLMSAGRE EALSRYLLCG LRLLHSLCDL APRHAKLEQI LLDDVKLSEQ  120
LLDMVFYLLI VFGRVEQRNR DFGILPLMHS ALVACSLHLL TGFISSQWQD LAHVLLAHPK  180
VDIFMDAAFG AVCATIKFLE IKLSSQHTNF CSTSSLTAEQ VVNYLCQQCE ASLQFLQSLC  240
QQKMFRERLL RNKELCGKGG ILFLAQAILK LNVMPHFTES PRVVASVSRM KARVLSILVS  300
LCEAESISYL DEVASTPCSL DLAKSVASEV LELLKAALGR DPRRLIPCSE RNFPMGLLQL  360
NAMRLADIFS DDSNFRSYIT IYFTKVLTAI FSLPHGDFLS SWCSSELPLK EEDGSIEYDL  420
FASSGWVLDV LSSTNLQNPT SLELMAVSNS MLQASYAHQR TSLFVKVIAN LHCFVPTICE  480
EQERNLFLRK FMECLPMDPS NVLPGFSFTS DVPKAATVCR NLRSLLSHAE SLIPNFLNEE  540
DVQLLRVFYN QLQSLLMSTE YEENRVQERK CAELISWDKF AKLDLNEHNQ EAQSAGGCSS  600
PLLRKEHPNL NNRSGNLKEE MSENSAYQDM DQKYLNSEHI SQEADAVRED KCKSSMSAFG  660
GITEINKDAQ NVETSGSDTS STRGKNVADQ MDNSEFPKVG VATKESAHGR NVEEKKIETV  720
QSEEKQRRKR KRTIMNDEQV EMIEMALENS PDMHRNAALI QSWSDKLSCH GSEVTSSQLK  780
NWLNNRKARL ARTGKDVRAT PEVESSFPEK QGGPGPRSSD SPGTPGEDAS VQPNVGRDPQ  840
SITWRSSTAE NSEASPAVGP TEFLQCEQGK HVILLGAAGE EIAKGKVFQV GGKWYGKNLD  900
ELRTCVVDIL ELKVKRGTRL PHPAVSTGVS FEEAETRIGV MRVMWDSIRI FASRSK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	727	732	RRKRKR