PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON96642.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

CO-like

Protein Properties

Length: 374aa MW: 42746.4 Da PI: 5.4593

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON96642.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.5	4.9e-07	5	46	2	37
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.......H 37 + r+C+ +++ + l+C+ ++ lC +C e H g H PON96642.1 5 RRRVCDYCNDATALLYCRADSAKLCFSCDREVH-GtnqlftkH 46 5789*****************************.435566666 PP
2	zf-B_box	27.4	7.1e-09	50	92	4	41
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 + C+ +++ ++++fC + ++ +C++C e H + H+++p PON96642.1 50 QLCDACDDSPATIFCSTESSVFCQNCDWERH-NlslslvHDRRP 92 68*****************************.668888888877 PP
3	CCT	65	2.2e-22	330	372	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Re a++RYkeKrktR+++K+irYesRK++Ae+R R+KGrF+k PON96642.1 330 REGAISRYKEKRKTRRYDKRIRYESRKVRAECRTRIKGRFAKI 372 99***************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence
MNPQRRRVCD YCNDATALLY CRADSAKLCF SCDREVHGTN QLFTKHSRFQ LCDACDDSPA 60 TIFCSTESSV FCQNCDWERH NLSLSLVHDR RPLEGFNGCP SVSEILGILG FEDFDKKALI 120 WNEERDGFFA PQLDGSLGLV DGFWETPSVV SLDDLILSNS SRNFQALGIP PLPKNRNAVC 180 GQHKEEVLVQ LRELAKVEPN SNDENVDAAD SLMGFQPVVP EQSLQPGRMW IGSQYDAEAE 240 PNTVPTFETH ACQWYVDNDE AADQDVLPEM SFRRHLHEGY KDSDKHSDIT DTRSHANDDG 300 HNERSLHPMD SRASSDFQKV APYELSSQER EGAISRYKEK RKTRRYDKRI RYESRKVRAE 360 CRTRIKGRFA KIDH

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence

MNPQRRRVCD YCNDATALLY CRADSAKLCF SCDREVHGTN QLFTKHSRFQ LCDACDDSPA  60
TIFCSTESSV FCQNCDWERH NLSLSLVHDR RPLEGFNGCP SVSEILGILG FEDFDKKALI  120
WNEERDGFFA PQLDGSLGLV DGFWETPSVV SLDDLILSNS SRNFQALGIP PLPKNRNAVC  180
GQHKEEVLVQ LRELAKVEPN SNDENVDAAD SLMGFQPVVP EQSLQPGRMW IGSQYDAEAE  240
PNTVPTFETH ACQWYVDNDE AADQDVLPEM SFRRHLHEGY KDSDKHSDIT DTRSHANDDG  300
HNERSLHPMD SRASSDFQKV APYELSSQER EGAISRYKEK RKTRRYDKRI RYESRKVRAE  360
CRTRIKGRFA KIDH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47890.1	1e-92	CO-like family protein