PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON96361.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 425aa MW: 46290.5 Da PI: 6.5072

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON96361.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.2	6.8e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++++G g+W++ +++ + R++k+c++rw +yl PON96361.1 14 KGPWTPEEDQKLLAYIEEHGHGSWRALPAKAELQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	52.7	9.8e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l PON96361.1 67 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence
MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PAKAELQRCG KSCRLRWTNY 60 LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLAKMG 120 IDPVTHKPKN DLLSNDGQSK NAANLSHMAQ WESARLEAEA RLVRESKHRC CSFTASNNPP 180 LNGSASTPPA HHQLLNNHHS NNNNSVFKAA TWSITTGSSG IWSKSPASGF HSIDLESPTS 240 TLTFSDNAPP AMAAGTTTNT TTTTSTSKHL TNNGNNNNVI EFVGSSSASS ESGIVKEEGE 300 QEWKGFGGSS HNNSVCRLSE NYEEGFDNSL SFNINGGGTS WTHAHSLKTT TTNNDDNAIV 360 EEGFTSLLLN NISDDPSFSD GGGGGDDDES GGSGSGTSEH YQDNENYWNS ILNLVNSSPS 420 DSPMF

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence

MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PAKAELQRCG KSCRLRWTNY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLAKMG  120
IDPVTHKPKN DLLSNDGQSK NAANLSHMAQ WESARLEAEA RLVRESKHRC CSFTASNNPP  180
LNGSASTPPA HHQLLNNHHS NNNNSVFKAA TWSITTGSSG IWSKSPASGF HSIDLESPTS  240
TLTFSDNAPP AMAAGTTTNT TTTTSTSKHL TNNGNNNNVI EFVGSSSASS ESGIVKEEGE  300
QEWKGFGGSS HNNSVCRLSE NYEEGFDNSL SFNINGGGTS WTHAHSLKTT TTNNDDNAIV  360
EEGFTSLLLN NISDDPSFSD GGGGGDDDES GGSGSGTSEH YQDNENYWNS ILNLVNSSPS  420
DSPMF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	1e-114	MYB family protein