PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON96211.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family NF-YA
Protein Properties Length: 340aa    MW: 37791.9 Da    PI: 7.5395
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON96211.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA99.34e-31187243158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 dep+YVNaKQy++Il+RR  Rakle+++kl  k rkpylheSRh hAl+R+RgsgGrF
  PON96211.1 187 DEPIYVNAKQYRAILRRRRFRAKLEAQNKL-LKVRKPYLHESRHLHALKRARGSGGRF 243
                 79****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    
MQNLLKKDSS VSTIQSESQL FVGCSSWENS SESHAQQSSI SQSLSLNMGF PAQHHQNTKQ  60
LILQFQDQDS SSTQSTGQSH PEVASMKGSN LYGPGMISTL QGYNETQGRS IGGHIKQVSS  120
IGTQDFVFSS QLDYSQPMAH IPFNYAEPYY GGLLAAAAYG PHAMIHHSQM VGMAPARVPL  180
PLDLTEDEPI YVNAKQYRAI LRRRRFRAKL EAQNKLLKVR KPYLHESRHL HALKRARGSG  240
GRFLNTKDVQ ESNCSPAERD PDNSASARPH LNKNMMESEV HQPENYKDGS STTSCSEVTS  300
ASNSDDIFQQ QELRFSVYPM HAHIVDSCTD GNQHHTSALR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.12e-52NF-YA family protein