PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON95077.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family LBD
Protein Properties Length: 254aa    MW: 28152.4 Da    PI: 6.0093
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON95077.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.36e-397105198
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC+++C +apyf++eq +++fa++hk+FGasnv+kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+a+la+lk
  PON95077.1   7 PCGACKFLRRKCVNGCLFAPYFCHEQgASHFAAIHKVFGASNVSKLLANLPVSDRCEAAVTISYEAQARIQDPIYGCVSHIFALQQQVVNLQAQLATLK 105
                 7*************************89*******************************************************************9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MTGSGSPCGA CKFLRRKCVN GCLFAPYFCH EQGASHFAAI HKVFGASNVS KLLANLPVSD  60
RCEAAVTISY EAQARIQDPI YGCVSHIFAL QQQVVNLQAQ LATLKDIQAA QSFPNGLGTV  120
NPNGKFCGKV ESHDDDHHQY PRQDHHVQYG WFELENSNRV PQIINSATSN LSSNFGTIMP  180
CYDKNGVLIN PNYPVGNKVD LIIPDENISY GSFEDTNSFS MSSFESMQPN NRLWAFQEYS  240
DEFQSTAFAY VQNS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.11e-55LBD family protein