PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON94495.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

CO-like

Protein Properties

Length: 482aa MW: 54530.9 Da PI: 4.7828

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON94495.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	28.2	3.9e-09	16	59	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k++++fC ++ +lC+ C + H+ H++v PON94495.1 16 ARACDSCLRKRARWFCAADDAFLCQACDASVHSAnqlasrHQRV 59 578*****************************667888888876 PP
2	CCT	67.9	2.6e-23	411	454	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ PON94495.1 411 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 454 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence
MITEKKAANA MVGKTARACD SCLRKRARWF CAADDAFLCQ ACDASVHSAN QLASRHQRVR 60 LQTSSFKGSN DESSLSSSSP AWHRGFTRKA RTTRHKAKQA KEGGDKNDED KVLMNHQPLP 120 FVPEMSNEEG DDKSPNYDEN EDEEQLLYRV PVFDPFAAEL CNPTVDDDHH HHHHHDTTEL 180 TVADDELTVA DDHDQSGKDG SDIMDHHEVL GFLPSELELA EFAADVESLL GGGGGLEEEY 240 SCDHDVKGFG IMELLDCKEE EEEDIAAKAR VKLEDEEDNQ AMLMEEAIAC EVNPYACFNE 300 KFDYDELSSV REGEEEEEEE DEEEGKVVIK NEIGTDRKMA VNRDILLRLN YEAVIAAWAS 360 QGSPWTTGTR PEVNPDHGWP DHMDTWRINN GRNANGDLIR GAGGSTDVEG REARVSRYRE 420 KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF VKRTSFMSPN SSTSTTSTST TFHFNNQHIM 480 NK

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence

MITEKKAANA MVGKTARACD SCLRKRARWF CAADDAFLCQ ACDASVHSAN QLASRHQRVR  60
LQTSSFKGSN DESSLSSSSP AWHRGFTRKA RTTRHKAKQA KEGGDKNDED KVLMNHQPLP  120
FVPEMSNEEG DDKSPNYDEN EDEEQLLYRV PVFDPFAAEL CNPTVDDDHH HHHHHDTTEL  180
TVADDELTVA DDHDQSGKDG SDIMDHHEVL GFLPSELELA EFAADVESLL GGGGGLEEEY  240
SCDHDVKGFG IMELLDCKEE EEEDIAAKAR VKLEDEEDNQ AMLMEEAIAC EVNPYACFNE  300
KFDYDELSSV REGEEEEEEE DEEEGKVVIK NEIGTDRKMA VNRDILLRLN YEAVIAAWAS  360
QGSPWTTGTR PEVNPDHGWP DHMDTWRINN GRNANGDLIR GAGGSTDVEG REARVSRYRE  420
KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF VKRTSFMSPN SSTSTTSTST TFHFNNQHIM  480
NK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	422	438	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	2e-78	CO-like family protein