PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON93876.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

E2F/DP

Protein Properties

Length: 919aa MW: 102520 Da PI: 6.141

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON93876.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	80.8	1.2e-25	622	686	1	70
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwk 70 r+++sL+llt+kf++l++++e+++++ln a+ L +v ++RRiYDi+NVLe+++liek++kn+irwk PON93876.1 622 RYDSSLGLLTRKFVNLIHEAEDRTLDLNRTADIL---EV--QKRRIYDITNVLEGIGLIEKTSKNHIRWK 686 6899****************************...99..**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 919 aa Download sequence
MSETNNQSGS VQNSRVTWEG CSVLLDINDG DRLVFARLSA AATLKIGNKN CSLQPLIGCA 60 FGSVFRVETG SEGPYLSRFS PSLEGNNIQE NNDSQFKDES KDNRALVDDN KAQSLTGEDI 120 DAMRRDGATG DEIVEALIAN SATFEKKTLF SQEKYRIKKQ KKYAPKVLVR RPFARRFLRA 180 DTLSLLLSMA NVSANSDVLV VDMVGGLLTG AVAERMGGTG YICSTYVGKT PYSMEIVRIF 240 NFGNDICKSI VRSSLDHLSS SHNGSLEQTD PSSTKGGLDD QTSSSVTTEE ICVASENEIS 300 NLLEDNISHG TRSSKSVKAG EKAPEEVIKL WKENGFSSLI VAAPDQDTWS LVRELLPLLS 360 NSAPFAIYHQ FLQPLATCMH NLQLGKMAIG LQISEPWLRE YQVLPSRTHP CMQMSAFGPG 420 GGGGPGLGRG PLLVEAEGGR RGFEPFFFFP PTLKNHSQSQ SQSLEGVSTI DLMAENPSSV 480 HSRSHSHSDG LSQFQFQPLL HFHSHSHSHS HSHYSPTPTT RELFPSTSSP TPHLHHHHHH 540 HSPLAPPDAF NRSRFSDFAK DSSQPETDSA FALTESNGKV VEARIRGRAA NSDSKVPTQS 600 KFGSQMLKVE CLTGLVPQNG CRYDSSLGLL TRKFVNLIHE AEDRTLDLNR TADILEVQKR 660 RIYDITNVLE GIGLIEKTSK NHIRWKRNDL LGPRELDDQI ARAKAEVESL YAEEYRLDEA 720 IRYQQNLLRN LEEDENSKKY LFFTEEDILT LPCFQNQTLI VIKAPKASFI EVPDPDEDIS 780 FPQRQYKMIV RSVRGPIDSF LLSKYQGQNE DITTKRTTYE DSPPRNGDYC VMEDEGLSSD 840 HPDDQKITFE SLSSLGPKAS GTQKIIPSEL GVNDDYWFGS DPEVSGYSFL FWKLTNLDYA 900 RLIKFKHWQL QRFDFISLI

Sequence ? help Back to Top

Protein Sequence Length: 919 aa Download sequence

MSETNNQSGS VQNSRVTWEG CSVLLDINDG DRLVFARLSA AATLKIGNKN CSLQPLIGCA  60
FGSVFRVETG SEGPYLSRFS PSLEGNNIQE NNDSQFKDES KDNRALVDDN KAQSLTGEDI  120
DAMRRDGATG DEIVEALIAN SATFEKKTLF SQEKYRIKKQ KKYAPKVLVR RPFARRFLRA  180
DTLSLLLSMA NVSANSDVLV VDMVGGLLTG AVAERMGGTG YICSTYVGKT PYSMEIVRIF  240
NFGNDICKSI VRSSLDHLSS SHNGSLEQTD PSSTKGGLDD QTSSSVTTEE ICVASENEIS  300
NLLEDNISHG TRSSKSVKAG EKAPEEVIKL WKENGFSSLI VAAPDQDTWS LVRELLPLLS  360
NSAPFAIYHQ FLQPLATCMH NLQLGKMAIG LQISEPWLRE YQVLPSRTHP CMQMSAFGPG  420
GGGGPGLGRG PLLVEAEGGR RGFEPFFFFP PTLKNHSQSQ SQSLEGVSTI DLMAENPSSV  480
HSRSHSHSDG LSQFQFQPLL HFHSHSHSHS HSHYSPTPTT RELFPSTSSP TPHLHHHHHH  540
HSPLAPPDAF NRSRFSDFAK DSSQPETDSA FALTESNGKV VEARIRGRAA NSDSKVPTQS  600
KFGSQMLKVE CLTGLVPQNG CRYDSSLGLL TRKFVNLIHE AEDRTLDLNR TADILEVQKR  660
RIYDITNVLE GIGLIEKTSK NHIRWKRNDL LGPRELDDQI ARAKAEVESL YAEEYRLDEA  720
IRYQQNLLRN LEEDENSKKY LFFTEEDILT LPCFQNQTLI VIKAPKASFI EVPDPDEDIS  780
FPQRQYKMIV RSVRGPIDSF LLSKYQGQNE DITTKRTTYE DSPPRNGDYC VMEDEGLSSD  840
HPDDQKITFE SLSSLGPKAS GTQKIIPSEL GVNDDYWFGS DPEVSGYSFL FWKLTNLDYA  900
RLIKFKHWQL QRFDFISLI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G47870.2	2e-87	E2F/DP family protein