PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON93558.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 422aa MW: 45705.4 Da PI: 5.6164

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON93558.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.1	8.7e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +vkq+G g W++ +++ g+ R++k+c++rw +yl PON93558.1 14 KGAWTAEEDQRLLSYVKQHGEGGWRSLPHKAGLLRCGKSCRLRWANYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	51.9	1.7e-16	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +++eE+e ++++++ lG++ W+tIar++ +Rt++++k++w++ PON93558.1 67 RGEFSPEEEETIIRLHANLGNR-WSTIARHLY-RRTDNEVKNYWNT 110 899*****************.****9.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence
MGRTPCCYQK GLRKGAWTAE EDQRLLSYVK QHGEGGWRSL PHKAGLLRCG KSCRLRWANY 60 LRPGIRRGEF SPEEEETIIR LHANLGNRWS TIARHLYRRT DNEVKNYWNT RLKRRVEAEV 120 SKSKDHPIIL SKTSNNDDIN PIIINSSSLV SCDEDSTSAN SDTFSGVTKD CTITSSTTTT 180 SHGVTELLST TSADVLNQGV PNLATTNASS TISQRCHKNN NALETKLLSE SSHVNKSTNS 240 TSSTSTNCIC DDHLDHDQVS RSANSTSSAS RVLLNKIASK LALINLEKII GSGGIGVGGV 300 GGGGGGGYSS LESSLASNST PSVNDNSSTD VVEDLLEEVV ETGFSAVCGT SGEELCQQGL 360 EIFDFGDLTL EANNNFLVEK TTAANYYNAK EGDDNTTTSY SLDQLLLTSF PKDCFEDLIG 420 HL

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence

MGRTPCCYQK GLRKGAWTAE EDQRLLSYVK QHGEGGWRSL PHKAGLLRCG KSCRLRWANY  60
LRPGIRRGEF SPEEEETIIR LHANLGNRWS TIARHLYRRT DNEVKNYWNT RLKRRVEAEV  120
SKSKDHPIIL SKTSNNDDIN PIIINSSSLV SCDEDSTSAN SDTFSGVTKD CTITSSTTTT  180
SHGVTELLST TSADVLNQGV PNLATTNASS TISQRCHKNN NALETKLLSE SSHVNKSTNS  240
TSSTSTNCIC DDHLDHDQVS RSANSTSSAS RVLLNKIASK LALINLEKII GSGGIGVGGV  300
GGGGGGGYSS LESSLASNST PSVNDNSSTD VVEDLLEEVV ETGFSAVCGT SGEELCQQGL  360
EIFDFGDLTL EANNNFLVEK TTAANYYNAK EGDDNTTTSY SLDQLLLTSF PKDCFEDLIG  420
HL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61420.2	5e-61	MYB family protein