PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON93477.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family Trihelix
Protein Properties Length: 378aa    MW: 41094.1 Da    PI: 10.4347
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON93477.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.32.6e-1576163186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +W++  + +Li+a  e+  +l+rg+lk+++W+ev++ +      ++  ++ +qCk++++ ++k+yk +k+  +++  +  s++p++d+l+
  PON93477.1  76 CWSEGATSVLIDAWGERYLELSRGNLKQKHWKEVADIVsgrdDYTKAPKTDIQCKNRIDTVKKKYKLEKAKLSSG--GGPSKWPFYDRLD 163
                 7*************************************85555555666778*********************97..67778******98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    
MEEEDEIQSH LSPGSGSPAS PRPVGRITVT VAAAPPQQPA PQNALTLALP IQQTRNGGGG  60
GGGGGGGVGG GGREDCWSEG ATSVLIDAWG ERYLELSRGN LKQKHWKEVA DIVSGRDDYT  120
KAPKTDIQCK NRIDTVKKKY KLEKAKLSSG GGPSKWPFYD RLDHLIGPTV KIASAGGHNA  180
MAVSSQQTHK VPLGIPVGVR GSSPYQGQRD QKPHIQPVQL KNQKMQFKRR GPVDSGSSRE  240
ASPASTDSFP MDFYERKRPR IGREMNLNAN SNPGRVGGGT LRAGREKKGW GSAVKELTQA  300
ILKFGEAYEH AESSKLQQVV EMEKQRMKFA KELELQRMQF FMKTQLEITQ LKHGRRGGIG  360
NASNHHSNNN NNNSDSSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.17e-72Trihelix family protein