PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PON93387.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 223aa MW: 25095.4 Da PI: 9.4442 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51 | 3.4e-16 | 9 | 56 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEd++l+d ++ +G g+W++ ar+ g++R++k+c++rw +yl PON93387.1 9 RGLWTAEEDKILLDHIRVHGRGNWNRTARETGLKRCGKSCRLRWMNYL 56 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.6 | 2.4e-17 | 62 | 106 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +++ E++l+++++k+lG++ W++Ia +++ gRt++q+k++w++ PON93387.1 62 RGDFSEAEEDLIIRLHKLLGNR-WSLIAGRVP-GRTDNQVKNHWNTC 106 899*******************.*********.***********986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 223 aa Download sequence |
MKAENENKRG LWTAEEDKIL LDHIRVHGRG NWNRTARETG LKRCGKSCRL RWMNYLSPSV 60 KRGDFSEAEE DLIIRLHKLL GNRWSLIAGR VPGRTDNQVK NHWNTCLSKK LGIKKGKSKV 120 VGMKNVTQSL SGELDKKVCT PSGPYLSELP NNTSEAQGNK VIKDGSQSPP GFMRGQGEVE 180 MSDNYDSPFL FSSIADDFIN PASFYFMEPP DEPSLGFVWN SGF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G14750.1 | 1e-61 | MYB family protein |