PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON93208.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family GRAS
Protein Properties Length: 568aa    MW: 64607.9 Da    PI: 5.3376
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON93208.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS315.71e-961935641374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykal.ppsetseknsseelaalkl.fsevsPilkfshl 96 
                 lvelLl+cAe v  +++e+ ++lL++  +l+s++g+p+qR+++yf eAL++r+ + ++ +++ +l + ++ ++++   +l+a+++ f++  P+ ++s +
  PON93208.1 193 LVELLLSCAEKVGCQQFERGSKLLNQCYQLCSNRGNPVQRVVHYFCEALRERVDKeTGRNIALSLlTQQQFDPDKAMMTLKAQHYaFHQEVPFSQLSLF 291
                 689****************************************************7778887776467777777788888888878************* PP

        GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                 +  qaI e v++++++HiiD++i  GlQW  L+qaLas   ++   l+iT++g    +sk+ +eetgerL +fA+++++p++f++l++++++ l+   +
  PON93208.1 292 AGLQAIIENVAEAKKIHIIDLGIRSGLQWTILMQALASSHeSQLELLKITALGT---TSKHLIEETGERLLSFAKTMNIPLSFKILMVSDMSHLKEGLF 387
                 *************************************66637778*********...6899************************************** PP

        GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                 +++ +E+++V +++ l ++l+e+ +les    v+k+++sl+P v+v +e ea+hns+ F++rf+eal yy a+fd+le+ + r++e+r+  E  ++g+ 
  PON93208.1 388 ELDADEKVVVYSSFLLRSFLSEPDQLES----VMKVIRSLNPCVMVAIEVEANHNSPFFVNRFIEALFYYGAFFDCLETFMKRDDENRMISESLYFGQG 482
                 ********************99999999....******************************************************************* PP

        GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 i+n+va+eg++r+ rh t   Wr+ + ++G+++++ls++   qakl+++k++ +d   ++ + ++l+  Wk+ p++s+S+W+
  PON93208.1 483 IRNIVATEGKQRKIRHVTIDVWRSFFARFGMESAELSSSSLYQAKLIIQKFScEDSCALDVNAKCLIVRWKGTPILSLSVWK 564
                 ****************************************************9999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    
MEEVNTEYRV HSYGGEKWGD SRATDYLSPD FGCHQDDISN EGFLFSKYQL KEQQEEKISD  60
YELLNDTRVD IDSPPLETCL EEIAKLGEIP PVISDVEAKK KKKCPISLAA LELLKNYSGG  120
VKKMMGERVK EPCNDKTSNE ANKLSTDEIL RIAGTRFIQS SSQPADHVPS MLSHPFESSF  180
YGLSYEETKD VELVELLLSC AEKVGCQQFE RGSKLLNQCY QLCSNRGNPV QRVVHYFCEA  240
LRERVDKETG RNIALSLLTQ QQFDPDKAMM TLKAQHYAFH QEVPFSQLSL FAGLQAIIEN  300
VAEAKKIHII DLGIRSGLQW TILMQALASS HESQLELLKI TALGTTSKHL IEETGERLLS  360
FAKTMNIPLS FKILMVSDMS HLKEGLFELD ADEKVVVYSS FLLRSFLSEP DQLESVMKVI  420
RSLNPCVMVA IEVEANHNSP FFVNRFIEAL FYYGAFFDCL ETFMKRDDEN RMISESLYFG  480
QGIRNIVATE GKQRKIRHVT IDVWRSFFAR FGMESAELSS SSLYQAKLII QKFSCEDSCA  540
LDVNAKCLIV RWKGTPILSL SVWKFVQY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-60GRAS family protein