PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON92936.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family MYB
Protein Properties Length: 310aa    MW: 34626.4 Da    PI: 5.0861
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON92936.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.3e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l++ +   G  +W+++++  g++R++k+c++rw +yl
       PON92936.1 14 KGPWTAEEDKKLINFILTNGHCCWRAVPKLAGLRRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding53.27e-1770111447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       T+ E++l +d++++lG++ W++Ia++++ gRt++++k++w+++
       PON92936.1  70 LTEAEEQLVIDLHARLGNR-WSKIASRLP-GRTDNEIKNHWNTH 111
                      699****************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MGRQPCCDKL GVKKGPWTAE EDKKLINFIL TNGHCCWRAV PKLAGLRRCG KSCRLRWTNY  60
LRPDLKRGLL TEAEEQLVID LHARLGNRWS KIASRLPGRT DNEIKNHWNT HIKKKLLKMG  120
IDPVTHEPLN KDDQASNMTE TPQDHANNTT STTTKNLTTQ TENHNHLSQE SSGSTTANSE  180
LAENSSSSSP AAENSSSGDE SALLLADTLC NDESFMNNLW DDNSKLSPPE LVDDSLWKYS  240
CPPSSTTYGD QKVVNYSDMG ILPSLEDNCS SSWLLDCQDF GIQDFGFDNC FDDFELNKAL  300
SAIEMGQNLH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12350.14e-95MYB family protein