PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON91828.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

CO-like

Protein Properties

Length: 512aa MW: 55287.9 Da PI: 6.4342

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON91828.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.7	1.8e-06	12	43	4	35
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHk 35 C+ ++e+ + l+C+ ++ lC C ++ H+ PON91828.1 12 VPCDFCSEQVAVLYCRADSAKLCLFCDQHVHS 43 67**************************9995 PP
2	zf-B_box	20.4	1.1e-06	54	97	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 ++C+++++++++ C + + lC+dC H + H++ PON91828.1 54 SQICDNCGSEPVSVRCSTENLVLCQDCDWDAHGScsvsasHDRN 97 579************************99999447777777765 PP
3	CCT	63.8	5.4e-22	464	506	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 R +a++RYkeK+ktR+++K+irYesRKa+A++R+RvKGrFvk+ PON91828.1 464 RGNAMQRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKA 506 7789*************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence
MVSPRSRTGN SVPCDFCSEQ VAVLYCRADS AKLCLFCDQH VHSANLLSRK HLRSQICDNC 60 GSEPVSVRCS TENLVLCQDC DWDAHGSCSV SASHDRNSIE GFSGCPSALE LASIWGFTLG 120 DNKKPGRPDP PIQNWGGAHE LGMPVESSWA FKYQSDGVSF QDLIVPSENG VVYRNTSCGE 180 VVAAKKMSGG GASCCGKKKQ VMYKQLVELL KRDLVAGEVG DGGGGGGGGG VESLLPETPS 240 RSGWQGDVEA LGLGDGSGDD DGVNGVLGDP AFTAVAVAVA QPSLQNRAPF TSLLMMPMRG 300 DMKESDGIVD GDVGLWDTNP SGQTTQIWDF HLGRLRVHEE PEAAYGVNDA GFVIKNFGEL 360 MKEGSLTNTK MFRDIYQLNC PVAHDDMTIN NNSNNPTASQ GPATSESNNL PIGRPSVGSA 420 FSKNEESSAS REMHFREQPC LVRSDTMKTA ATSKAEMELL AQNRGNAMQR YKEKKKTRRY 480 DKHIRYESRK ARADTRKRVK GRFVKAIEAP DG

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence

MVSPRSRTGN SVPCDFCSEQ VAVLYCRADS AKLCLFCDQH VHSANLLSRK HLRSQICDNC  60
GSEPVSVRCS TENLVLCQDC DWDAHGSCSV SASHDRNSIE GFSGCPSALE LASIWGFTLG  120
DNKKPGRPDP PIQNWGGAHE LGMPVESSWA FKYQSDGVSF QDLIVPSENG VVYRNTSCGE  180
VVAAKKMSGG GASCCGKKKQ VMYKQLVELL KRDLVAGEVG DGGGGGGGGG VESLLPETPS  240
RSGWQGDVEA LGLGDGSGDD DGVNGVLGDP AFTAVAVAVA QPSLQNRAPF TSLLMMPMRG  300
DMKESDGIVD GDVGLWDTNP SGQTTQIWDF HLGRLRVHEE PEAAYGVNDA GFVIKNFGEL  360
MKEGSLTNTK MFRDIYQLNC PVAHDDMTIN NNSNNPTASQ GPATSESNNL PIGRPSVGSA  420
FSKNEESSAS REMHFREQPC LVRSDTMKTA ATSKAEMELL AQNRGNAMQR YKEKKKTRRY  480
DKHIRYESRK ARADTRKRVK GRFVKAIEAP DG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.1	1e-106	CO-like family protein