PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON91695.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB_related

Protein Properties

Length: 905aa MW: 100543 Da PI: 4.6388

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON91695.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.4	9.3e-10	845	896	1	46
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg....kgRtlkqcksrwqk 46 + +WT eE+++l+++v+++ + Wk+I + kgRt ++k++w++ PON91695.1 845 KVPWTLEEEQKLKEGVQKFSDErnIWKKILEFGSnvfmKGRTTVNLKDKWRT 896 579***************99****98889*************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 905 aa Download sequence
MDNMLVSEST LAWLWVIEAI ASFEEVDPSL LRDAIEAAPE LPDDLGKNTK EFVALRCLEG 60 LFASQHELAS GVPPAQGLKV GFDLSASCED VLQRILQETS VSNLRVSASE LSRWDIRPFI 120 RHKRACMPKC TLEQLKDAIL DGTHPYADFL REKGGLTFPG RDNRSVVNLS NHDSVTARPA 180 LTGAGVQSMR VEVNLDHLIL ENRNKQLGES LHDGDILPSK RGMSGSASKD MAGNVYENCN 240 GKNSSDDQHM NAKRVKQHAP SDNLSIGQNP VHFHGREPLE DSSERDVPVT NGGHDLPEIE 300 MGIMEEGRVL ENGCNECTVT KRSRQSNNDG FHKNALDIPC NSPVIPPVIS GEEAHQCLSA 360 DETNGVGNHC AQSSGAFQSV YQNRVSLHGK EQTEESSERD FQATVEEGSV LVDDCNEGTV 420 SNRSQQSNDE ELRKNQSEIL YNVPVLLQDT TRDDPHQNLS VDETKDVSEP CAEPSSAPPE 480 TVDKISTKES KRSYEHDFQF HEPNPASYDR SRQDITAGEA KVDSNGCGEE MSSDNDGYHN 540 ERIDVAKKKH AFLSSQCTVS HDSLIVDWTE QNLCMKCNET GSLLVCSTNN CQLVVHEKCG 600 GSLARFDNKG NFYCPFCAYS LAIMEYLEAK KRSSLANKEL AAFICMSSEH QPEESVERLN 660 MEKPLSSGGT ANEDILGQNH EEQLGGTEKN EGNQLELKVN EDNDHQCQNV ILDGQEVEIS 720 ALRNNTVNLE CTEKREKEGE ERIVGECPSA RRFEGQENEV PGESDNVAAE NTDVVIVNQG 780 KADVGIQQQV LKDQDIDAGK RPVYDNSEGT SETDDYESIS NYHIGIRKRE NCCTYPATPQ 840 TRRKKVPWTL EEEQKLKEGV QKFSDERNIW KKILEFGSNV FMKGRTTVNL KDKWRTMCKV 900 SSKGN

Sequence ? help Back to Top

Protein Sequence Length: 905 aa Download sequence

MDNMLVSEST LAWLWVIEAI ASFEEVDPSL LRDAIEAAPE LPDDLGKNTK EFVALRCLEG  60
LFASQHELAS GVPPAQGLKV GFDLSASCED VLQRILQETS VSNLRVSASE LSRWDIRPFI  120
RHKRACMPKC TLEQLKDAIL DGTHPYADFL REKGGLTFPG RDNRSVVNLS NHDSVTARPA  180
LTGAGVQSMR VEVNLDHLIL ENRNKQLGES LHDGDILPSK RGMSGSASKD MAGNVYENCN  240
GKNSSDDQHM NAKRVKQHAP SDNLSIGQNP VHFHGREPLE DSSERDVPVT NGGHDLPEIE  300
MGIMEEGRVL ENGCNECTVT KRSRQSNNDG FHKNALDIPC NSPVIPPVIS GEEAHQCLSA  360
DETNGVGNHC AQSSGAFQSV YQNRVSLHGK EQTEESSERD FQATVEEGSV LVDDCNEGTV  420
SNRSQQSNDE ELRKNQSEIL YNVPVLLQDT TRDDPHQNLS VDETKDVSEP CAEPSSAPPE  480
TVDKISTKES KRSYEHDFQF HEPNPASYDR SRQDITAGEA KVDSNGCGEE MSSDNDGYHN  540
ERIDVAKKKH AFLSSQCTVS HDSLIVDWTE QNLCMKCNET GSLLVCSTNN CQLVVHEKCG  600
GSLARFDNKG NFYCPFCAYS LAIMEYLEAK KRSSLANKEL AAFICMSSEH QPEESVERLN  660
MEKPLSSGGT ANEDILGQNH EEQLGGTEKN EGNQLELKVN EDNDHQCQNV ILDGQEVEIS  720
ALRNNTVNLE CTEKREKEGE ERIVGECPSA RRFEGQENEV PGESDNVAAE NTDVVIVNQG  780
KADVGIQQQV LKDQDIDAGK RPVYDNSEGT SETDDYESIS NYHIGIRKRE NCCTYPATPQ  840
TRRKKVPWTL EEEQKLKEGV QKFSDERNIW KKILEFGSNV FMKGRTTVNL KDKWRTMCKV  900
SSKGN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	827	845	RKRENCCTYPATPQTRRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58340.2	4e-06	MYB_related family protein