PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON90996.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

SRS

Protein Properties

Length: 366aa MW: 39453.1 Da PI: 7.6341

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON90996.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	228.5	1.2e-70	138	293	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaeskkel 100 g+++CqdCGnqakkdC+h RCRtCCksrgf+C+thvkstWvpaakrrerqqqlaa+++++ ++ ++skr+r++++++ +a ++++++++ ++++ PON90996.1 138 GGGMNCQDCGNQAKKDCSHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQQDHQQFrVVDNSKRQRDSQAAALAACTTATTTTTRLPNNT 236 5789**************************************************9998887765678888888875555444444444444444444 PP DUF702 101 etss....lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 + + +P+ev+s+avfrcv+vs++dd++e++aYqtav+igGh+fkGiLydqG+e PON90996.1 237 SGLElggaFPAEVNSPAVFRCVKVSAMDDADENYAYQTAVNIGGHLFKGILYDQGPE 293 33336667*********************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MAGFFCLGGS RDHHPHPQSV PSKQEDQQDQ AERESNLFLF RSADSEICTN NNNNNNKGNS 60 SSSFEIWPHH HHHHHHNHHH HQHPQNFNNY VLSFGSTSPS SRANNLRNLN DVVSDDPTRL 120 GFTVMRPGGL GIGGGGGGGG MNCQDCGNQA KKDCSHLRCR TCCKSRGFQC QTHVKSTWVP 180 AAKRRERQQQ LAALQQQDHQ QFRVVDNSKR QRDSQAAALA ACTTATTTTT RLPNNTSGLE 240 LGGAFPAEVN SPAVFRCVKV SAMDDADENY AYQTAVNIGG HLFKGILYDQ GPEGHYTGGE 300 GSSSGRGGGS TGEDGGQQLN LITAATTAAT STAAGNTSIS LLDPSMYPTP LNAFMAGTQF 360 FPPPRS

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MAGFFCLGGS RDHHPHPQSV PSKQEDQQDQ AERESNLFLF RSADSEICTN NNNNNNKGNS  60
SSSFEIWPHH HHHHHHNHHH HQHPQNFNNY VLSFGSTSPS SRANNLRNLN DVVSDDPTRL  120
GFTVMRPGGL GIGGGGGGGG MNCQDCGNQA KKDCSHLRCR TCCKSRGFQC QTHVKSTWVP  180
AAKRRERQQQ LAALQQQDHQ QFRVVDNSKR QRDSQAAALA ACTTATTTTT RLPNNTSGLE  240
LGGAFPAEVN SPAVFRCVKV SAMDDADENY AYQTAVNIGG HLFKGILYDQ GPEGHYTGGE  300
GSSSGRGGGS TGEDGGQQLN LITAATTAAT STAAGNTSIS LLDPSMYPTP LNAFMAGTQF  360
FPPPRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	4e-65	SRS family protein