PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON90881.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

HD-ZIP

Protein Properties

Length: 358aa MW: 40045.1 Da PI: 4.6756

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON90881.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.2	6.5e-19	56	109	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k PON90881.1 56 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 109 566899***********************************************9 PP
2	HD-ZIP_I/II	129.2	1.7e-41	55	147	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy Lk++ydalk + ++L++++e+L +e++e PON90881.1 55 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGLLKANYDALKLNYDALKHDNEALLKEIRE 147 69*************************************************************************************999986 PP

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence
MKRLSSSESL GALMSVCPTT EEHSPSSHVY GRDFRSMLDG LDEEGCVEES GHVSEKKRRL 60 SVDQVKALEK NFEVENKLEP ERKVKLAQEL GLQPRQVAVW FQNRRARWKT KQLERDYGLL 120 KANYDALKLN YDALKHDNEA LLKEIRELKS KLQDENSESN LSVKEELIMG PTESDNKLTL 180 IDAAAAPPPP PPDHNHHLPP SEEESKVLNY DEGLNDNNNG VVLEVVSMFP DFKDGASDSD 240 SSAILNEDVH NHHSNNNNNS NSPNNNGSIS STGVLQNLMM SSPSPPPAPS TSLNFNGSSS 300 SSPLSSSSLN CFQFQKPAPF QPQFVKIEEH NFFAEEACNF FNDDQAPTLQ WYCSDQWN

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence

MKRLSSSESL GALMSVCPTT EEHSPSSHVY GRDFRSMLDG LDEEGCVEES GHVSEKKRRL  60
SVDQVKALEK NFEVENKLEP ERKVKLAQEL GLQPRQVAVW FQNRRARWKT KQLERDYGLL  120
KANYDALKLN YDALKHDNEA LLKEIRELKS KLQDENSESN LSVKEELIMG PTESDNKLTL  180
IDAAAAPPPP PPDHNHHLPP SEEESKVLNY DEGLNDNNNG VVLEVVSMFP DFKDGASDSD  240
SSAILNEDVH NHHSNNNNNS NSPNNNGSIS STGVLQNLMM SSPSPPPAPS TSLNFNGSSS  300
SSPLSSSSLN CFQFQKPAPF QPQFVKIEEH NFFAEEACNF FNDDQAPTLQ WYCSDQWN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	56	85	KKRRLSVDQVKALEKNFEVENKLEPERKVK
2	104	112	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22430.1	4e-68	HD-ZIP family protein