PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON90657.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MIKC_MADS

Protein Properties

Length: 271aa MW: 31520 Da PI: 10.0026

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON90657.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.1	1.8e-31	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+ PON90657.1 9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 58 79***********************************************8 PP
2	K-box	111.7	7.4e-37	77	173	4	100
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 s++ s++ea+ + +qqe++kL+++i++Lq+++Rh+lGe ++s+s+k+L++Le +Le+++++iRskKne+l+++ie +qk+e elq++n++Lr+k++e PON90657.1 77 SNTGSVAEANVQFYQQESSKLRRQIRELQNSNRHILGEAISSMSFKDLKSLEGRLERGISRIRSKKNEMLFAEIEFMQKREMELQNHNNYLRAKIAE 173 444459****************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYANN 60 SVRATIEKYK KACTDSSNTG SVAEANVQFY QQESSKLRRQ IRELQNSNRH ILGEAISSMS 120 FKDLKSLEGR LERGISRIRS KKNEMLFAEI EFMQKREMEL QNHNNYLRAK IAENERIQQQ 180 QEQQEEQQIK QQMNLMPVAA RAASESNMPP AQSYDHRSFL PVTLMDTSHH YSRPDQTVEV 240 QEKRKETRLS LPALFLYSNI SVVAIKLLMY M

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58780.1	1e-107	MIKC_MADS family protein