PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON89675.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

bHLH

Protein Properties

Length: 485aa MW: 53028.2 Da PI: 6.4054

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON89675.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	52.8	7.1e-17	276	322	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq PON89675.1 276 VHNLSERRRRDRINEKMKALQELIPHS-----NKTDKASMLDEAIEYLKSLQ 322 6***********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence
MIHDDETVSW IQYPIEDSFE KDFCSNFFSE LPSCDPIEVE KPIKHIEEEK SSKFGDSDTT 60 HVLSTSQHHK LKPSNGVPCP ENHMPPPRLH YSSSAQQNQS LGSLEKVVNF SQFSAPGKCG 120 LKSSSGQQLA GNESGTRGEV RECSVMTVGL SHCGSNQLPA DLDVSWVSSN NGDGNTGLSA 180 GAFKEDVQKI MLQGESGKTE TLEPTVTSSS GGSGSSFGRT CKQSTATTSG NNDNKRKIRD 240 AEELECQSEA AEHESAAANK SSQRSGSSRK SRAAEVHNLS ERRRRDRINE KMKALQELIP 300 HSNKTDKASM LDEAIEYLKS LQLQLQVMWM GSGMAPMMFP GVQHYMSRMG MAMGPPALPS 360 IHNPMHLPRV PVVDQSMIVA PTTDQSVLCQ TPAFNPINYQ NQMQNASFQE QYARYMGFHS 420 MQTMSQPVNM FRFSPQTAQQ SQSIAQQGIS TGPSNCGVPT DGGLSGKMGE SFDHFSVISK 480 QIVIM

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence

MIHDDETVSW IQYPIEDSFE KDFCSNFFSE LPSCDPIEVE KPIKHIEEEK SSKFGDSDTT  60
HVLSTSQHHK LKPSNGVPCP ENHMPPPRLH YSSSAQQNQS LGSLEKVVNF SQFSAPGKCG  120
LKSSSGQQLA GNESGTRGEV RECSVMTVGL SHCGSNQLPA DLDVSWVSSN NGDGNTGLSA  180
GAFKEDVQKI MLQGESGKTE TLEPTVTSSS GGSGSSFGRT CKQSTATTSG NNDNKRKIRD  240
AEELECQSEA AEHESAAANK SSQRSGSSRK SRAAEVHNLS ERRRRDRINE KMKALQELIP  300
HSNKTDKASM LDEAIEYLKS LQLQLQVMWM GSGMAPMMFP GVQHYMSRMG MAMGPPALPS  360
IHNPMHLPRV PVVDQSMIVA PTTDQSVLCQ TPAFNPINYQ NQMQNASFQE QYARYMGFHS  420
MQTMSQPVNM FRFSPQTAQQ SQSIAQQGIS TGPSNCGVPT DGGLSGKMGE SFDHFSVISK  480
QIVIM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	281	286	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59060.4	1e-39	bHLH family protein