PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON89163.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family NF-YA
Protein Properties Length: 344aa    MW: 37692.1 Da    PI: 6.9806
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON89163.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1032.7e-32176232158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 +ep+YVNaKQyq+Il+RRq+Rak+e+ek+l +k+rkpylheSRh+hA+rR+Rg+gGrF
  PON89163.1 176 QEPVYVNAKQYQGILRRRQARAKAEAEKRL-IKNRKPYLHESRHQHAMRRARGTGGRF 232
                 69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    
MRSKSQNKDR LGLDSHSISP TNVYSEPWWR NVGYNPGSLP MTGGNASNSS SLECPNGGSD  60
SNEDHSLSND GPNEEDDDGT KDSHVSASPQ SVGNRGQEHQ IMQHVSSTVP AVRDECPTQH  120
PQLELIGHSI QACASNPYQD PYYGGMMAAY GHQPMGYPPF YGMPQARMPL PLEMAQEPVY  180
VNAKQYQGIL RRRQARAKAE AEKRLIKNRK PYLHESRHQH AMRRARGTGG RFAKKTDADT  240
SNCTEKERVS GSGQAHSSLS ACSSGSEPLA SDSNETWNSP NSQQEAYTAL NYVNGNGCYQ  300
NHGGMQDAKY QLCPSERAEE GDCSGQQRGS LSTNQASQRR LAIQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.13e-71NF-YA family protein