PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON88914.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

GRF

Protein Properties

Length: 355aa MW: 39603.6 Da PI: 8.4583

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON88914.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	79	4.4e-25	80	124	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e PON88914.1 80 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEV 124 79****************************************985 PP
2	QLQ	59.9	7.3e-21	14	49	1	36
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 s+FTa+Q+q+L++Q+l++Ky+++++P+Pp+L+ ++ PON88914.1 14 SPFTATQWQELEHQALIFKYMVSGVPIPPDLIYSVK 49 89*****************************87665 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MISANSSAAR GNRSPFTATQ WQELEHQALI FKYMVSGVPI PPDLIYSVKR SLDSSFSSRL 60 FSQHPTGWGC FEMGFGRKVD PEPGRCRRTD GKKWRCSKEA YPDSKYCERH MHRGRNRSRK 120 PVEVSSSTTT ILTTTTAMTS PSPAISSVNR NLSGTGPTIS SYSQLSSSSI ISEPLSGHNH 180 PHQYPFGYSS HSSSSSSRPP DYGLSTQNSN TSSPYFCVKS ESYITQPDKD YRYFQGTKES 240 MDELAFFPES SGNARSFPES CHSLMSSYRG YSQPQFHGLT DESREAIKQS AEQDQQHCFI 300 LGTDFKSERG NKSGKESEIT QKPLHHFFGE WPPKNTASAD SWLDLASNSR VPNDG

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MISANSSAAR GNRSPFTATQ WQELEHQALI FKYMVSGVPI PPDLIYSVKR SLDSSFSSRL  60
FSQHPTGWGC FEMGFGRKVD PEPGRCRRTD GKKWRCSKEA YPDSKYCERH MHRGRNRSRK  120
PVEVSSSTTT ILTTTTAMTS PSPAISSVNR NLSGTGPTIS SYSQLSSSSI ISEPLSGHNH  180
PHQYPFGYSS HSSSSSSRPP DYGLSTQNSN TSSPYFCVKS ESYITQPDKD YRYFQGTKES  240
MDELAFFPES SGNARSFPES CHSLMSSYRG YSQPQFHGLT DESREAIKQS AEQDQQHCFI  300
LGTDFKSERG NKSGKESEIT QKPLHHFFGE WPPKNTASAD SWLDLASNSR VPNDG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	2e-53	GRF family protein