PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON88852.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family GRAS
Protein Properties Length: 458aa    MW: 52664.5 Da    PI: 6.2926
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON88852.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS322.49e-99814571373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..........sseelaalklfsevsP 89 
                 +++l+++c e +s++dl  a++l++ ls ++s++gd+++Rl + +t+AL +rl+ ++++  ++ ++  + ++n          ++   + + ++++++P
  PON88852.1  81 MRQLVIRCSELMSQSDLVGAHRLMSVLSANSSSYGDSVERLLHQLTRALFRRLHLMQQHHHQSSSSIISVSNNitdqdydnhdVQALHSCYLTLNQITP 179
                 5899************************************************98865554433322222222222334555533333344455****** PP

        GRAS  90 ilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl....v 182
                 +++f+hltaNqaIle +++   +++Hi+Dfdi++GlQWp+++qaL +R +++ +lRiT+ g     +   l++tg+rL +fA++lg++f+f++l    +
  PON88852.1 180 FIRFCHLTANQAILEVIDEThhQALHILDFDIMHGLQWPPFMQALIER-HPTLRLRITATGT----DLSLLRRTGDRLLRFAQSLGLRFQFHPLllpaA 273
                 *****************99878999**********************9.7889*********....9**************************988763 PP

        GRAS 183 akrledleleeLrvkp......gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                  ++ + l +++++++       +EalaVn++l lhrll+++ +   +++ +L+ +k l+P+vv+++e+ea+h        +++ l++y+a+fdslea+l
  PON88852.1 274 PHDRDHLLINSININIpstlepDEALAVNCALYLHRLLKDDDDD--CIRYFLRSIKALNPRVVTIAEREANH-------TLADVLDHYTAIFDSLEATL 363
                 4455556566664433335555****************666554..5599**********************.......7999**************** PP

        GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                 p++s+er  vE+++lgrei++vv  e+       +++e W+ +l+++GF++vpls +a +qaklllr ++ s+gy+++  ++s++lgW++rpL+svS+W
  PON88852.1 364 PPNSRERLAVEQVWLGREIMEVVGSEHMV-----RRYEWWQVMLRSCGFSNVPLSPFALSQAKLLLRLHYpSEGYQLHILNDSFFLGWRNRPLFSVSSW 457
                 ************************99997.....7789************************************************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    
MLMGSFNSSH HEQRQVGQGE EEEEEEEGQE EDQHEQAAAA PSDLEIYHHQ YHQQQQQQVQ  60
ASHPQVFPAA AASPPINAIH MRQLVIRCSE LMSQSDLVGA HRLMSVLSAN SSSYGDSVER  120
LLHQLTRALF RRLHLMQQHH HQSSSSIISV SNNITDQDYD NHDVQALHSC YLTLNQITPF  180
IRFCHLTANQ AILEVIDETH HQALHILDFD IMHGLQWPPF MQALIERHPT LRLRITATGT  240
DLSLLRRTGD RLLRFAQSLG LRFQFHPLLL PAAPHDRDHL LINSININIP STLEPDEALA  300
VNCALYLHRL LKDDDDDCIR YFLRSIKALN PRVVTIAERE ANHTLADVLD HYTAIFDSLE  360
ATLPPNSRER LAVEQVWLGR EIMEVVGSEH MVRRYEWWQV MLRSCGFSNV PLSPFALSQA  420
KLLLRLHYPS EGYQLHILND SFFLGWRNRP LFSVSSWH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-116GRAS family protein