PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON88552.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family MYB_related
Protein Properties Length: 351aa    MW: 37972.5 Da    PI: 7.2543
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON88552.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.43.4e-13110154347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + ++lG+g+W+ Iar     Rt+ q+ s+ qky
       PON88552.1 110 PWTEEEHRLFLIGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKY 154
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    
MTRRCSHCSN NGHNSRTCPS RGGGTGSGSG GGGGLKLFGV RLIDGSIIKK SASMGNLSAH  60
YHSSSSAAGS PNPESPSSDP HHEPDGYLSD DPAHASCSAN RRGERKKGVP WTEEEHRLFL  120
IGLQKLGKGD WRGIARNYVV SRTPTQVASH AQKYFIRQTN ATRRKRRSSL FDMVPDMVSD  180
HPPVPEEDLL PSFNKMEPDN ANSLPSLNLS LQSEFEPMEA THEAKTEEAN EPMIGSNGFR  240
PMVPGFFPAY MPVPFPLWPP SAAPLEERIA ETPHHQVLKP IPIVAKEPVN VDELVGMSQL  300
SLGEAERGHR EPSPLSLKLL GEPSRQSAFH SNAPVSGSDL SEGKTTAIQA V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.11e-106MYB_related family protein