PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON88399.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

bHLH

Protein Properties

Length: 358aa MW: 39222.1 Da PI: 6.9881

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON88399.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.7	0.00047	248	286	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq PON88399.1 248 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 286 6677889999999999998.....8******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence
MMAGNPNWWS MQYPPSHSQT LFPPNPHHHH QTYVLAGSSS LPAALNHSFP PDHAQDPPHY 60 SWSHLLLGSS NTSSTTGLSG DEDRFGNSSS SNTLSHHLFQ PRKLENWEED QILNGNNPAA 120 RLPAAATADH NQHHHHDVIK QEVSLKKNLL CGDQGREEEY LQAINRPGNV WSQQVVMPVS 180 SPNSCVTSNT SLSSNNMLDF SYNNKPDGNG RNQNTDHSSE CNSTATGGVV SKRARVQPPS 240 SQPPLKVRKE KLGDRITALH QLVSPFGKTD TASVLLEAIG YIRFLQSQIE ALSSPYLGHA 300 SKSMRNNQQY VDGQGDDHEK PKDLKSRGLC LVPVSCTQHV GSDNGADYWA PAAYGSGF

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence

MMAGNPNWWS MQYPPSHSQT LFPPNPHHHH QTYVLAGSSS LPAALNHSFP PDHAQDPPHY  60
SWSHLLLGSS NTSSTTGLSG DEDRFGNSSS SNTLSHHLFQ PRKLENWEED QILNGNNPAA  120
RLPAAATADH NQHHHHDVIK QEVSLKKNLL CGDQGREEEY LQAINRPGNV WSQQVVMPVS  180
SPNSCVTSNT SLSSNNMLDF SYNNKPDGNG RNQNTDHSSE CNSTATGGVV SKRARVQPPS  240
SQPPLKVRKE KLGDRITALH QLVSPFGKTD TASVLLEAIG YIRFLQSQIE ALSSPYLGHA  300
SKSMRNNQQY VDGQGDDHEK PKDLKSRGLC LVPVSCTQHV GSDNGADYWA PAAYGSGF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	2e-57	bHLH family protein