PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON88375.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 379aa MW: 42768.9 Da PI: 5.259

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON88375.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.5	1.4e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWTteEde+l ++++ +G g+W++ ++ g+ R++k+c++rw +yl PON88375.1 14 KGRWTTEEDEILTKYIQAHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	56.9	4.8e-18	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T+eE+e +v++++ lG++ W++Ia++++ gRt++++k++w+++l PON88375.1 67 RGNITAEEEETIVKLHNALGNR-WSLIAEHLP-GRTDNEIKNYWNSHL 112 7999****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence
MGRAPCCEKL GLKKGRWTTE EDEILTKYIQ AHGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRTDLKRGNI TAEEEETIVK LHNALGNRWS LIAEHLPGRT DNEIKNYWNS HLSRKIYTFS 120 KQLAMESSSP TIINNVAKLA SVSNRRGGRS RTSRSSAKKN KNTNQNLAAK TSPEKPEMDV 180 TTADHDVQVV LLESSSSSAS DKPSSSSATL LPCPIQGVEK SQSFGAKQEE EGSQRRETEE 240 LLGPNEWLDR EVMRLSYVLE DRALDRPSGN ENMALEEQRE NEKTTSVLNA EARESSSTAE 300 LSGEWHTCTS SAINNNSGFD DDGTWLSWNW EEYVETHNNN YNSTNNDNNE IWGEYLSDQE 360 GERVFSLWET GNFEGHGRN

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence

MGRAPCCEKL GLKKGRWTTE EDEILTKYIQ AHGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRTDLKRGNI TAEEEETIVK LHNALGNRWS LIAEHLPGRT DNEIKNYWNS HLSRKIYTFS  120
KQLAMESSSP TIINNVAKLA SVSNRRGGRS RTSRSSAKKN KNTNQNLAAK TSPEKPEMDV  180
TTADHDVQVV LLESSSSSAS DKPSSSSATL LPCPIQGVEK SQSFGAKQEE EGSQRRETEE  240
LLGPNEWLDR EVMRLSYVLE DRALDRPSGN ENMALEEQRE NEKTTSVLNA EARESSSTAE  300
LSGEWHTCTS SAINNNSGFD DDGTWLSWNW EEYVETHNNN YNSTNNDNNE IWGEYLSDQE  360
GERVFSLWET GNFEGHGRN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49330.1	3e-74	MYB family protein