PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON88281.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C3H

Protein Properties

Length: 485aa MW: 50860.6 Da PI: 8.2653

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON88281.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.9	1.4e-12	50	75	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C f++rtG+C yG+rC+F+H++ PON88281.1 50 DEADCIFYLRTGYCGYGSRCRFNHPR 75 6799********************96 PP
2	zf-CCCH	37.8	3.3e-12	99	121	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++f+rtGtCk+G++Ck++H++ PON88281.1 99 VCQYFMRTGTCKFGASCKYHHPR 121 6********************96 PP
3	zf-CCCH	36.4	8.5e-12	142	167	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G++CkF+H++ PON88281.1 142 GEKECSYYVKTGQCKFGASCKFHHPQ 167 7899********************97 PP
4	zf-CCCH	37.1	5.5e-12	308	333	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+G++C+++H+p PON88281.1 308 GQQDCQYYMRTGDCKFGSSCRYHHPP 333 6789********************97 PP
5	zf-CCCH	35.3	2e-11	355	378	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +lC+++a+ G Ck+G+ CkF H+ PON88281.1 355 APLCSHYAQRGVCKFGPACKFDHP 378 68*********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence
MERYGRATTE GGSQSDPSPE WTGTGPETGL EEPVWPLGLG REELYPERPD EADCIFYLRT 60 GYCGYGSRCR FNHPRDRGAV MGVARAGGGE FPERVGQLVC QYFMRTGTCK FGASCKYHHP 120 RQGGGSAGPV SLNYDGYPLR PGEKECSYYV KTGQCKFGAS CKFHHPQSAG MQLHVPSPAT 180 PVPPVPASVP AHTLYPQMQS PSGSSSQQYG VVVARPSLVQ GSYVQGPYGP VLISPGMVPL 240 PGWGPYVASV SPLPSPSNQP PVGSGQFYGV TQLSHSAPPY TGPYPPGASP AGPSISSQKE 300 HSFPERPGQQ DCQYYMRTGD CKFGSSCRYH HPPDIIAPKT TVNLSSAGLP MRPGAPLCSH 360 YAQRGVCKFG PACKFDHPVG TLSYSPSASS LSDMPVAPYP VGSAIGTLAP SSSSSDLRPE 420 LTPGSTKDST SARMSSSMSS SSGSVGSTFS KGGPASHVSL QQPAQNPGTS TGGNASTSSE 480 SRTSS

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence

MERYGRATTE GGSQSDPSPE WTGTGPETGL EEPVWPLGLG REELYPERPD EADCIFYLRT  60
GYCGYGSRCR FNHPRDRGAV MGVARAGGGE FPERVGQLVC QYFMRTGTCK FGASCKYHHP  120
RQGGGSAGPV SLNYDGYPLR PGEKECSYYV KTGQCKFGAS CKFHHPQSAG MQLHVPSPAT  180
PVPPVPASVP AHTLYPQMQS PSGSSSQQYG VVVARPSLVQ GSYVQGPYGP VLISPGMVPL  240
PGWGPYVASV SPLPSPSNQP PVGSGQFYGV TQLSHSAPPY TGPYPPGASP AGPSISSQKE  300
HSFPERPGQQ DCQYYMRTGD CKFGSSCRYH HPPDIIAPKT TVNLSSAGLP MRPGAPLCSH  360
YAQRGVCKFG PACKFDHPVG TLSYSPSASS LSDMPVAPYP VGSAIGTLAP SSSSSDLRPE  420
LTPGSTKDST SARMSSSMSS SSGSVGSTFS KGGPASHVSL QQPAQNPGTS TGGNASTSSE  480
SRTSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	1e-137	C3H family protein