PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON88079.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

TCP

Protein Properties

Length: 382aa MW: 39659.4 Da PI: 5.266

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON88079.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	109.9	3.7e-34	89	158	4	73
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a++ai+e+tgt++ +a ++ PON88079.1 89 VKRKSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGLKSDGETIRWLLEHAEQAIIEATGTGTVPAIAV 158 5899**********************************************************77776333 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MEENDEIIDA NDEEQSNNTS NDMSASEASI VEPPPPPPPA AAVAETAPSS TILMKEEFTD 60 TERELSERSL SMGLIKVPLS TTSSGAVAVK RKSKDRHTKV EGRGRRIRMP ATCAARIFQL 120 TRELGLKSDG ETIRWLLEHA EQAIIEATGT GTVPAIAVSV GGTLKIPTTS PARPNGEITE 180 VVPRKRRRRA SNSEFIDVND QVSVSSGLAP IAPMTYGGAG NGTGGGNVAQ GLVPLWPVGP 240 NNSAAGPFLM FPNSGAVPGV ANQAQLWAIQ AGAGVTTPFF GVQARPISNF VSALQPVLLE 300 DPQVSSGSVS SGAATTTGSG GSCSSTLGPT LGSGTTCSTV VTSGGGTGST TTTQMLRDFS 360 LEIYDKKELQ FMGRSQTRCS KP

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MEENDEIIDA NDEEQSNNTS NDMSASEASI VEPPPPPPPA AAVAETAPSS TILMKEEFTD  60
TERELSERSL SMGLIKVPLS TTSSGAVAVK RKSKDRHTKV EGRGRRIRMP ATCAARIFQL  120
TRELGLKSDG ETIRWLLEHA EQAIIEATGT GTVPAIAVSV GGTLKIPTTS PARPNGEITE  180
VVPRKRRRRA SNSEFIDVND QVSVSSGLAP IAPMTYGGAG NGTGGGNVAQ GLVPLWPVGP  240
NNSAAGPFLM FPNSGAVPGV ANQAQLWAIQ AGAGVTTPFF GVQARPISNF VSALQPVLLE  300
DPQVSSGSVS SGAATTTGSG GSCSSTLGPT LGSGTTCSTV VTSGGGTGST TTTQMLRDFS  360
LEIYDKKELQ FMGRSQTRCS KP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	184	188	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	6e-61	TCP family protein