PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON88061.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

Trihelix

Protein Properties

Length: 1024aa MW: 114210 Da PI: 7.4709

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON88061.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	28.2	5.1e-09	249	306	23	81
trihelix 23 rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 +gk ++ + +ev+++++++g++r +k+ kw+n+ ++++k+ e+e++++ e++ +y PON88061.1 249 KGKTRADKDREVAEFLQRHGVNRDAKTAGTKWDNMLGEFRKVYEWERGGEREQV-GKSY 306 4677888899*************************************9965555.3445 PP

Sequence ? help Back to Top
Protein Sequence Length: 1024 aa Download sequence
MGDNKGETTK KQQQQSKQQP QPQPQQQQQI SSSSPKDPIL DESTESARPH HHGHQHQQQS 60 TLVVSGASHI ISAPLFIPSG ATSSSPFDQQ FDQAATATAV VSTNPKRPRY TTGQWKLLPS 120 PSSQQKQTAQ VTVLTGESSP VSAQQQPQLL LQSTAASSSD TASSPSHSLP SLSASGQDTS 180 KPDLAGENPI HQQFRKGKYV SPVWKPNEML WLARAWRVQY QGGSSPHNGS GSSSRAEPGG 240 TDHLGSQTKG KTRADKDREV AEFLQRHGVN RDAKTAGTKW DNMLGEFRKV YEWERGGERE 300 QVGKSYFRLS PYERKLHRLP ASFDEEVFEE LSQFMGSKMR TPQGRPGAGS LIVAGDPRSL 360 PGPPPSFKED DQFPFSARTT KQLIMGSAGE AFYYGGRGAL MGFESAVDIG GPSPPSISSK 420 ELRRIGKIRM TWEESVSLWA EEAEHNRGRV KLQGSSFLNA DELTYLDDAM VACNMEAFEE 480 GPLRGFSVDR FVSGQQVKVF GRKKPFSVSA SGFPEKVQLP LAEPSVRSTP PWEFQDPTDH 540 YVGCLRVPPP SIPTLFELSW YLQEPPPEEL RFPLRKDVYR DLPQGKDLFF TISNELLDCR 600 TLTYDILSPI LRTNPSLTSS TSTGRDSFIG LWDDCINRIV SKFCSVEMVN VRKPTNNLSS 660 TEVLQDQWPN VTGFVRSFCL WRGEETDQLR EGQIDPSNSI VEKLLWTYQD LPYILGYYAV 720 GFLVTFCALS RGANQDRIIR TDLQTLDLSS PSDRLKALVP CYRVASLLPL LADRCFNSVN 780 NIINVGSSKM FPYSDFERLD MGNGNVTEIT PNTVTRFYPN RRKWGAVKEI YDFLDHRIPH 840 AEFIHHSSEK DLGLVFKPRG YSRPSRPTNI DQLVEALKCV TKALVALHDL SFMHRDLSWD 900 KVVRRVDREN EWFVAGFEEA VVAPQIYPMM VQVAGAAVEQ VAARGRQAPE MERGLHGVKV 960 DVWGVGYLVR TCGVAGVPKM LRELQSRCLD QNPEQRPTAA DCYHHLLQLQ SSLQSPTASG 1020 VVLM

Sequence ? help Back to Top

Protein Sequence Length: 1024 aa Download sequence

MGDNKGETTK KQQQQSKQQP QPQPQQQQQI SSSSPKDPIL DESTESARPH HHGHQHQQQS  60
TLVVSGASHI ISAPLFIPSG ATSSSPFDQQ FDQAATATAV VSTNPKRPRY TTGQWKLLPS  120
PSSQQKQTAQ VTVLTGESSP VSAQQQPQLL LQSTAASSSD TASSPSHSLP SLSASGQDTS  180
KPDLAGENPI HQQFRKGKYV SPVWKPNEML WLARAWRVQY QGGSSPHNGS GSSSRAEPGG  240
TDHLGSQTKG KTRADKDREV AEFLQRHGVN RDAKTAGTKW DNMLGEFRKV YEWERGGERE  300
QVGKSYFRLS PYERKLHRLP ASFDEEVFEE LSQFMGSKMR TPQGRPGAGS LIVAGDPRSL  360
PGPPPSFKED DQFPFSARTT KQLIMGSAGE AFYYGGRGAL MGFESAVDIG GPSPPSISSK  420
ELRRIGKIRM TWEESVSLWA EEAEHNRGRV KLQGSSFLNA DELTYLDDAM VACNMEAFEE  480
GPLRGFSVDR FVSGQQVKVF GRKKPFSVSA SGFPEKVQLP LAEPSVRSTP PWEFQDPTDH  540
YVGCLRVPPP SIPTLFELSW YLQEPPPEEL RFPLRKDVYR DLPQGKDLFF TISNELLDCR  600
TLTYDILSPI LRTNPSLTSS TSTGRDSFIG LWDDCINRIV SKFCSVEMVN VRKPTNNLSS  660
TEVLQDQWPN VTGFVRSFCL WRGEETDQLR EGQIDPSNSI VEKLLWTYQD LPYILGYYAV  720
GFLVTFCALS RGANQDRIIR TDLQTLDLSS PSDRLKALVP CYRVASLLPL LADRCFNSVN  780
NIINVGSSKM FPYSDFERLD MGNGNVTEIT PNTVTRFYPN RRKWGAVKEI YDFLDHRIPH  840
AEFIHHSSEK DLGLVFKPRG YSRPSRPTNI DQLVEALKCV TKALVALHDL SFMHRDLSWD  900
KVVRRVDREN EWFVAGFEEA VVAPQIYPMM VQVAGAAVEQ VAARGRQAPE MERGLHGVKV  960
DVWGVGYLVR TCGVAGVPKM LRELQSRCLD QNPEQRPTAA DCYHHLLQLQ SSLQSPTASG  1020
VVLM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	9e-08	Trihelix family protein