PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON87434.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

bHLH

Protein Properties

Length: 345aa MW: 38690.7 Da PI: 6.7198

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON87434.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.9	4.3e-14	130	181	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i+ A+e++k+L+ PON87434.1 130 QRMTHIAVERNRRKQMNEHLAVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 181 79**************************...9****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MALEALSNSN ELFNFVIYDT ISATPCSYQD SSETTTTNFL FNNDNTTAPT TLINPPPPPP 60 PHPDHQVEAL ETCSFTTRIR NRQFMPREGA GGHDDDAHRD IKQSLGAVVV RKKRRRKPRV 120 CKNKEEAESQ RMTHIAVERN RRKQMNEHLA VLRSLMPESY VQRGDQASIV GGAIEFVKEL 180 EHLLQSLEAQ KLQVLQGTNY NGGSDHHDHD HEDSSNINSG IPKLLVPPPF AQFFVYPQYT 240 WSQISNKYTS NTNAAIADIE VTLIETHANL RILSRRSPKQ LSKLIAGFQT LHLTVLHLNV 300 TTLNALVLYS VSVKVEEACL LTSVDDIAAA VHHMLRIIEE EAALC

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MALEALSNSN ELFNFVIYDT ISATPCSYQD SSETTTTNFL FNNDNTTAPT TLINPPPPPP  60
PHPDHQVEAL ETCSFTTRIR NRQFMPREGA GGHDDDAHRD IKQSLGAVVV RKKRRRKPRV  120
CKNKEEAESQ RMTHIAVERN RRKQMNEHLA VLRSLMPESY VQRGDQASIV GGAIEFVKEL  180
EHLLQSLEAQ KLQVLQGTNY NGGSDHHDHD HEDSSNINSG IPKLLVPPPF AQFFVYPQYT  240
WSQISNKYTS NTNAAIADIE VTLIETHANL RILSRRSPKQ LSKLIAGFQT LHLTVLHLNV  300
TTLNALVLYS VSVKVEEACL LTSVDDIAAA VHHMLRIIEE EAALC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	117	RKKRRRK
2	111	118	RKKRRRKP
3	112	117	KKRRRK
4	131	142	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46690.1	5e-61	bHLH family protein