PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON87383.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family GRAS
Protein Properties Length: 632aa    MW: 69212.9 Da    PI: 5.1773
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON87383.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS455.63.2e-1392636221374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 lv++L++cAeav++++l+ a+al+++++ la +++ +m+++a++f++AL +r++r    ly    p++  +++ ++ l++   f+e++P+lkf+h+taN
  PON87383.1 263 LVHALMACAEAVQQNNLSIAEALVKQINYLAMSQAGAMRKVATFFAQALTRRIYR----LY----PENPLDHSLADFLQM--HFYETCPYLKFAHFTAN 351
                 689****************************************************....44....444443446666555..5**************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 qaIlea++g++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p++++++ l+e+g++La++Ae+++v+fe++ +va++l+dl+ ++L+++p
  PON87383.1 352 QAILEAFQGKKRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAPDNSDHLQEVGWKLAQLAETIHVEFEYRGFVANSLADLDASMLELRP 450
                 *************************************************************************************************** PP

        GRAS 199 ..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                    E++aVn+v++lh+ll++++++e+    vL++vk+++P++++vveqea+hn++ Fl+rf+e+l+yys+lfdsle ++   + +++++++++lg++i 
  PON87383.1 451 seVESVAVNSVFELHKLLARPGAIEK----VLSVVKQMKPEILTVVEQEANHNGHVFLDRFTESLHYYSTLFDSLEGSV---NGQDKVMSEVYLGKQIA 542
                 88899*********************....************************************************7...99*************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 nvvaceg +r+erhetl++Wr r+++aGF p++l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaW+
  PON87383.1 543 NVVACEGPDRVERHETLAQWRTRMDSAGFAPAHLGSNAFKQASMLLALFAgGDGYRVEENNGCLLLGWHTRPLIATSAWQ 622
                 *******************************************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    
MKREHPNQSR YLHNPRSDPS MDASSSGAGA GGYVSGSNPT TAGKASKMWE DECQQDGVMD  60
ELLAVLGYKV KSSDMADVAQ KLELLEEAMC SVQQDNLSQL ASDTVHYNPS DLSTWLETML  120
TELNPPPNFD SVMAAPLPPP PPQPQPQRKS IEDSFLAPAE SSITSIDFPD QRNQSSIVFE  180
DSSSSDYDLK AIPGKAIYSQ ATSSQFESSS SRETKRLKTS PGSISSDLFA ANSSMPGAYN  240
DVAAAADSSR PVLVDSQENG IRLVHALMAC AEAVQQNNLS IAEALVKQIN YLAMSQAGAM  300
RKVATFFAQA LTRRIYRLYP ENPLDHSLAD FLQMHFYETC PYLKFAHFTA NQAILEAFQG  360
KKRVHVIDFS MNQGMQWPAL MQALALRPGG PPAFRLTGIG PPAPDNSDHL QEVGWKLAQL  420
AETIHVEFEY RGFVANSLAD LDASMLELRP SEVESVAVNS VFELHKLLAR PGAIEKVLSV  480
VKQMKPEILT VVEQEANHNG HVFLDRFTES LHYYSTLFDS LEGSVNGQDK VMSEVYLGKQ  540
IANVVACEGP DRVERHETLA QWRTRMDSAG FAPAHLGSNA FKQASMLLAL FAGGDGYRVE  600
ENNGCLLLGW HTRPLIATSA WQLAGRRAGV AH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein