PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON87320.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family Trihelix
Protein Properties Length: 301aa    MW: 33566.3 Da    PI: 4.8682
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON87320.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.65e-1628118186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +W+++ + +Li+a  ++  +l+rg+l++++W++v++++     + ++ +r+ +qCk++++ ++k+yk +k++ ++ +   +s++ +fd+l+
  PON87320.1  28 CWSEEATSTLIDAWGRRYLDLNRGNLRQKDWQDVADAVnalhgHTKKTHRTDVQCKNRIDTIKKKYKVEKARVSSSNGALTSSWTFFDRLD 118
                 7****************************************99999**************************9999888889*******97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MGDATETLTP SSATPSSHSR PMPVREDCWS EEATSTLIDA WGRRYLDLNR GNLRQKDWQD  60
VADAVNALHG HTKKTHRTDV QCKNRIDTIK KKYKVEKARV SSSNGALTSS WTFFDRLDVL  120
IGSNQKKPSP SLSPSPPVAV PLPPSYRKNS SAAAASAAAA AAAAAAVVLP QKRAALPADE  180
GFFRRNYSAM AAAAAAAEAE EDEDELENEE EVEEEEEDEE EEDERDSDES GEEGMRMLAR  240
AIARFGQVYE KVEAEKLRQM VELEKQRMQF AKDLEVQRMR MFMDTQVQLE RIKRGKRSGS  300
N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.14e-43Trihelix family protein