PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON87052.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family RAV
Protein Properties Length: 390aa    MW: 42362.4 Da    PI: 9.4287
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON87052.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.29.6e-1475123155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a+++++g
  PON87052.1  75 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDVAAQRFRG 123
                 89****9888.8*********3.....5**********99*************98 PP
2B3102.81.9e-32214313196
                 EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                 f+k+ tpsdv+k++rlv+pk++ae+h    ++++ +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk++gLk+gD+v F+++   +++l++ 
  PON87052.1 214 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqSSNTSKGVLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLKAGDIVSFQRSTGPDKQLYID 312
                 89***************************9888899***************************************************876677777776 PP

                 E CS
          B3  96 v 96 
                 +
  PON87052.1 313 W 313
                 6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    
MDGISSSTTD ESTTSTTESI SLTAAPAAPP PFTAAKPSPP PAESLCRMGS GASVVLDGCG  60
GGGGSEAESR KLPSSKYKGV VPQPNGRWGA QIYEKHQRVW LGTFNEEDEA ARAYDVAAQR  120
FRGRDAVTNF KPLSSDTDQN DEIEASFLSS HSKAEIVDML RKHTYNDELE QSRRNYGSRN  180
CRANKLNRTP SSAGHSGLGF GSGSDPLKAR EQLFEKAVTP SDVGKLNRLV IPKQHAEKHF  240
PLQSSNTSKG VLLNFEDGGG KVWRFRYSYW NSSQSYVLTK GWSRFVKEKG LKAGDIVSFQ  300
RSTGPDKQLY IDWKARDNSN SNGNGPVTGP VQQLEPVQMV RLFGVNIFKI PGSGVVVEAG  360
IGGGCNGKRI RDFELLELEC SKKPRIIGAL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-143RAV family protein