PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON86820.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family M-type_MADS
Protein Properties Length: 313aa    MW: 34257.9 Da    PI: 10.3311
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON86820.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.82.1e-214287449
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 n+sn qvtfskRr g++KKA+EL++LC+ae a+i+fs+  k++ +
  PON86820.1 42 TNESNLQVTFSKRRSGLFKKASELCTLCGAEMAIIVFSPGRKVFSF 87
                699************************************9999877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    
METPKPKPNP IPSPNPNPNP NSSDPNKKAS RGRQKVEMVK MTNESNLQVT FSKRRSGLFK  60
KASELCTLCG AEMAIIVFSP GRKVFSFGHP NVESVIDRFM NRNQPAPTTV NTGTMQLIEA  120
HRNANVRELN QQLMQVLGQL DLEKKRAEEL KKARKASQAE CWWEGPLETL DLKQLEQLKT  180
AMEELKKTVT QQADRLLIQT TSSNTLLPPN FNINNTNNNN AGPFFVGGGS SSSIGGGVMV  240
PFEQVAKSII NNNINYTNAR FDQASTSTVN PAMPLQLPAP LQVPAPAPAP ARSTASQVYN  300
NNNSVGYGGR GLF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-64M-type_MADS family protein