PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON86507.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family MYB
Protein Properties Length: 334aa    MW: 36356.4 Da    PI: 6.9352
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON86507.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.5e-081273347
                     SS-HHHHHHHHHHHHHTTTT..................-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg..................tWktIartmgkgRtlkqcksrwqky 47
                      W+ eE++ + +a++ + +                   +W++ a++++  ++ +++k ++q++
       PON86507.1 12 TWSIEEEKAFENAIAIHWSSstttgdqdeedeeaseeqQWEKMASMVP-SKSMEELKRHYQML 73
                     7*****************99****************************.************87 PP
2Myb_DNA-binding38.72.3e-12162206347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
       PON86507.1 162 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 206
                      7*****************************99************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    
MSSTSTTTTT TTWSIEEEKA FENAIAIHWS SSTTTGDQDE EDEEASEEQQ WEKMASMVPS  60
KSMEELKRHY QMLIDDVTAI EEGRIPVPNY PVLVGDDPSA TTTMMGKDKD SHVISGSGSE  120
KRLSSSGHGS SGFSGLHGHD SASGHGGKGG SRADQERRKG IPWTEEEHRL FLLGLDKFGK  180
GDWRSISRNF VISRTPTQVA SHAQKYFIRL NSVNRDRRRS SIHDITSVTN GEVPPHQAPI  240
TGVQQTNINS PSVPAMGAPP VKHRGQTHMP GIGMYGAPMG HPVAAPPGHM GSAVGTPVML  300
PPPGHHHHHH HPHPHHPPYV VPVAYPMAPP TMHQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.18e-67MYB family protein