PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON85916.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 409aa MW: 45352.9 Da PI: 9.8671

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON85916.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.2	6.8e-17	134	179	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+q+G+ +W++Ia+ + gR++k+c++rw++ PON85916.1 134 RGHWRPAEDAKLKELVTQYGPQNWNLIAENLE-GRSGKSCRLRWFNQ 179 899***************************.*********996 PP
2	Myb_DNA-binding	54.6	2.4e-17	186	229	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l+ a++++G++ W+ I+r ++ gRt++ +k++w+ PON85916.1 186 RRAFSEEEEERLLAAHRLYGNK-WAMISRLFP-GRTDNAVKNHWHV 229 678*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MGFQSQMSLQ HLKSEFSGLN GYQNMNFLPT PNPNPTPALA LAPAPVPALA LAPQLSLSKT 60 FDGESRSCEM GPQILNSSSE ETKKTWVFPE KNKKISDLNN MSVFDKKGSS FELVEEEQKG 120 GKSRKNGHTK LCARGHWRPA EDAKLKELVT QYGPQNWNLI AENLEGRSGK SCRLRWFNQL 180 DPRINRRAFS EEEEERLLAA HRLYGNKWAM ISRLFPGRTD NAVKNHWHVI MARKHREQSN 240 VYKRRRPSSS SYCSQIIPKV IDNMTLPNNN NASSTESTIS NTINDESVST CTDLSLTPSS 300 TRSAPPGFFT KFKPSSQQES QIGLKDGSFD KLIGLYRVGQ RGGGGVSKIV VKLDQCGQSD 360 SNSENSAADS VGTNRSINLT LSSGTNQNGK EEKIISNFRF IDFLGVGAT

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MGFQSQMSLQ HLKSEFSGLN GYQNMNFLPT PNPNPTPALA LAPAPVPALA LAPQLSLSKT  60
FDGESRSCEM GPQILNSSSE ETKKTWVFPE KNKKISDLNN MSVFDKKGSS FELVEEEQKG  120
GKSRKNGHTK LCARGHWRPA EDAKLKELVT QYGPQNWNLI AENLEGRSGK SCRLRWFNQL  180
DPRINRRAFS EEEEERLLAA HRLYGNKWAM ISRLFPGRTD NAVKNHWHVI MARKHREQSN  240
VYKRRRPSSS SYCSQIIPKV IDNMTLPNNN NASSTESTIS NTINDESVST CTDLSLTPSS  300
TRSAPPGFFT KFKPSSQQES QIGLKDGSFD KLIGLYRVGQ RGGGGVSKIV VKLDQCGQSD  360
SNSENSAADS VGTNRSINLT LSSGTNQNGK EEKIISNFRF IDFLGVGAT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	2e-66	MYB family protein