PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON85477.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C3H

Protein Properties

Length: 707aa MW: 76490.8 Da PI: 5.1726

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON85477.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.7	1.5e-06	277	297	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg PON85477.1 277 PCPEFRK-GSCRQGDACEYAHG 297 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 707 aa Download sequence
MCSGSKRKPS TGGSIMEGES EKQEGLRYNS SVLLELSASD DLDGFKTAVE EEGRDIDEAS 60 LWYGRRIGSK KMGFEERTPL MIAAMFGSRS VLNYILETGC VDVNRACGSD RATALHCAAA 120 GASACSAEVV KLLLAASADA NSLDANGNRP CDLIVPARNS LAFNSRKKAL EVMLKGLEQT 180 SDLPEQVVDE LEDQEKLEIL TPRVSKDGLE KKEYPVDLSL PDIKNGIYST DDFRMYTFKI 240 KPCSRAYSHD WTECPFVHPG ENARRRDPRK YHYSCVPCPE FRKGSCRQGD ACEYAHGIFE 300 CWLHPAQYRT RLCKDETGCQ RRVCFFAHKQ EELRPLYAST GSAVPSPRSF AGSSLDMGSI 360 SPLALGSPSV LIPPLSTPPL TPSGASPPMS GNMWQSQSNI APPTLQLPGS RLKSTLSARD 420 MDLDVDFISL ESHRRRQQQL MDEISGISSP SSWNSGLSTA SPFATPGDRT GDLNRVGGVK 480 PTNLEDIFGS LDPSILPQLQ GLSLDTAASQ LQSPTGIQMR QSMNQQLPSS YSLSLSSSPA 540 RTSPLFGVDS SGGAAAAAVM SSRAAAFANR SQSFIERSAV NRHSGLSSPA GSSIMPSNLL 600 DWGSPDGKLD WGIQGEELNK LRKSASFGLR SSGGSYGGVP AASPMAATVD EPDVSWVQSL 660 VVDAPPVKPV QFNSFEEQQQ CHYDNGASEM PPAWVEQMYM EQEQMVA

Sequence ? help Back to Top

Protein Sequence Length: 707 aa Download sequence

MCSGSKRKPS TGGSIMEGES EKQEGLRYNS SVLLELSASD DLDGFKTAVE EEGRDIDEAS  60
LWYGRRIGSK KMGFEERTPL MIAAMFGSRS VLNYILETGC VDVNRACGSD RATALHCAAA  120
GASACSAEVV KLLLAASADA NSLDANGNRP CDLIVPARNS LAFNSRKKAL EVMLKGLEQT  180
SDLPEQVVDE LEDQEKLEIL TPRVSKDGLE KKEYPVDLSL PDIKNGIYST DDFRMYTFKI  240
KPCSRAYSHD WTECPFVHPG ENARRRDPRK YHYSCVPCPE FRKGSCRQGD ACEYAHGIFE  300
CWLHPAQYRT RLCKDETGCQ RRVCFFAHKQ EELRPLYAST GSAVPSPRSF AGSSLDMGSI  360
SPLALGSPSV LIPPLSTPPL TPSGASPPMS GNMWQSQSNI APPTLQLPGS RLKSTLSARD  420
MDLDVDFISL ESHRRRQQQL MDEISGISSP SSWNSGLSTA SPFATPGDRT GDLNRVGGVK  480
PTNLEDIFGS LDPSILPQLQ GLSLDTAASQ LQSPTGIQMR QSMNQQLPSS YSLSLSSSPA  540
RTSPLFGVDS SGGAAAAAVM SSRAAAFANR SQSFIERSAV NRHSGLSSPA GSSIMPSNLL  600
DWGSPDGKLD WGIQGEELNK LRKSASFGLR SSGGSYGGVP AASPMAATVD EPDVSWVQSL  660
VVDAPPVKPV QFNSFEEQQQ CHYDNGASEM PPAWVEQMYM EQEQMVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	0.0	C3H family protein