PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON85278.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

Protein Properties

Length: 588aa MW: 64780 Da PI: 8.0386

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON85278.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	56.8	4.1e-18	34	124	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ffk+++ d +++ l lp kfa e +++ ++ +led+sg++Wev+l +k g+ +++GW++F+ ++gLk+gDfv+F + +s f vvk+++ PON85278.1 34 FFKIMIG-DDFSK-FLFLPPKFAHEVsSLV---GQRTILEDSSGEQWEVTL--SKVNGSLAFQQGWNSFALDHGLKVGDFVLFFHLTESHF--VVKIYD 123 6777733.44444.59*****8885444...346899********..999999*********************8877888..**99 PP S CS B3 99 k 99 k PON85278.1 124 K 124 7 PP
2	B3	36.2	1.1e-11	518	573	30	87
..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 30 keesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 + e k + l+d+ r W v + +k + +v+t+GW+ F kang+++gD ++Fk +++ PON85278.1 518 NVERKVVLLQDPAQRLWPVLY--HGKLRLIVITTGWEAFSKANGIQSGDQCLFKIENE 573 34556899***********..999999***********************6554 PP

Sequence ? help Back to Top
Protein Sequence Length: 588 aa Download sequence
MDSKVKACTA CTRMCWMVHR EKKNSTDSHS VSSFFKIMIG DDFSKFLFLP PKFAHEVSSL 60 VGQRTILEDS SGEQWEVTLS KVNGSLAFQQ GWNSFALDHG LKVGDFVLFF HLTESHFVVK 120 IYDKTSCEKL NYPERINHRK RMRDDKSSTG KDGPFGTVDE HSTDKHGSGT SVKFGVAAEN 180 VGCLNEVNDE NSTDRHGSGT SVKSAVAAEK GCLKVNDVVE LPISGNVPKA EYIEEIHCMM 240 DRDPGVKQGD YGRSNFDLSV FEMWNHTSSK RSNRESLADE RSPHQVDSLL RSQNGAALID 300 KDKVAKVVGS GAGPSDSFNC EKKESISHKD SCIAMTSGNP LPSPVVNPKE NGENTSNMSN 360 RGMKVCQVAK GNIQVTPSQK HNVNNDNYQT ANKSVKGTMA ASSISTRFGT KNFQSGKMMK 420 VVKEEPMEIE SDPCGQGSIQ KLSGESFKVT NGGLPRRVSF GVRKDDKSLP VVKLENVDLV 480 GVSSTDPPNF SSLLATSSES FIELPEYLPF PSTKGRSNVE RKVVLLQDPA QRLWPVLYHG 540 KLRLIVITTG WEAFSKANGI QSGDQCLFKI ENEFEGIYSV SKLESRKK

Sequence ? help Back to Top

Protein Sequence Length: 588 aa Download sequence

MDSKVKACTA CTRMCWMVHR EKKNSTDSHS VSSFFKIMIG DDFSKFLFLP PKFAHEVSSL  60
VGQRTILEDS SGEQWEVTLS KVNGSLAFQQ GWNSFALDHG LKVGDFVLFF HLTESHFVVK  120
IYDKTSCEKL NYPERINHRK RMRDDKSSTG KDGPFGTVDE HSTDKHGSGT SVKFGVAAEN  180
VGCLNEVNDE NSTDRHGSGT SVKSAVAAEK GCLKVNDVVE LPISGNVPKA EYIEEIHCMM  240
DRDPGVKQGD YGRSNFDLSV FEMWNHTSSK RSNRESLADE RSPHQVDSLL RSQNGAALID  300
KDKVAKVVGS GAGPSDSFNC EKKESISHKD SCIAMTSGNP LPSPVVNPKE NGENTSNMSN  360
RGMKVCQVAK GNIQVTPSQK HNVNNDNYQT ANKSVKGTMA ASSISTRFGT KNFQSGKMMK  420
VVKEEPMEIE SDPCGQGSIQ KLSGESFKVT NGGLPRRVSF GVRKDDKSLP VVKLENVDLV  480
GVSSTDPPNF SSLLATSSES FIELPEYLPF PSTKGRSNVE RKVVLLQDPA QRLWPVLYHG  540
KLRLIVITTG WEAFSKANGI QSGDQCLFKI ENEFEGIYSV SKLESRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01580.1	5e-12	B3 family protein