PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON85168.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MIKC_MADS

Protein Properties

Length: 251aa MW: 28558.4 Da PI: 9.1536

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON85168.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.5	2.8e-31	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRrng+lKKA+ELSvLCdaevavi fss+gklye+ PON85168.1 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVAVICFSSRGKLYEFG 58 79**********************************************95 PP
2	K-box	98.9	7.6e-33	81	171	9	99
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 e++++s+++e++kLk+++e+Lqr+qR+llGedL++L++keLq+Le+qLe +l + R++K+++++eq+e+l+kke++l + n++L+ kle PON85168.1 81 SIERETQSWYHEVTKLKSKYESLQRTQRNLLGEDLGPLDVKELQNLEKQLEGALAQARQRKMQIMTEQVEDLRKKERQLGDLNTQLKLKLE 171 457789*********************************************************************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVAVICFSS RGKLYEFGSA 60 GISKTLERYQ RCCFTPHDQN SIERETQSWY HEVTKLKSKY ESLQRTQRNL LGEDLGPLDV 120 KELQNLEKQL EGALAQARQR KMQIMTEQVE DLRKKERQLG DLNTQLKLKL EAEGQSLKAI 180 QNLWSSNVTS GSSSFALHTS SQSNITMDCQ QPTEPVLQIG YHQYVPAEGT SNSIPKSMAG 240 TEANFMHGWV L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	1e-110	MIKC_MADS family protein