PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON85113.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family Trihelix
Protein Properties Length: 640aa    MW: 73218.8 Da    PI: 6.6934
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON85113.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.83.4e-29157242187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW++qe+l+L+e+r+++++r++++++k+plW+++s+ m +e+g++rs k+Ckek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  PON85113.1 157 RWPRQETLTLLEIRSRLNSRFKDTNQKGPLWDQISRIMaEEHGYQRSGKKCKEKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 242
                 8*************************************999*****************************98..55667*******85 PP
2trihelix42.91.2e-13470545174
    trihelix   1 rWtkqevlaLiearremeerlrr..gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 
                 rW ++e+  L+e+ r+ ++   +  +      Wee+++km   gf rs+ +Ckekwe+l+ + + ++e +k+r+++
  PON85113.1 470 RWNEEEISSLVELIRSCNSLEATsfQGTSVVVWEEIASKMVCLGFDRSAAECKEKWESLSVYVRMTNECKKNRRED 545
                 8***********9997665544412678899**********************************99999988533 PP
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    
MDDHEYGGIP ADFRQLMAAA AARTEQQLIA SSGRGHVAEP YSSSVQGRNV IMAHNNNNYL  60
QQSYPTLGAG LVDHFGSGHH RNHNRFSVSS TTNTASNGVA LYHHELESST SGVRGGGGGG  120
GGGDGGGLWP INNNSIGNYE NNNYSYNYNE EGNNTSRWPR QETLTLLEIR SRLNSRFKDT  180
NQKGPLWDQI SRIMAEEHGY QRSGKKCKEK FENLYKYYKK TKEGKAGRQD GKHYRFFRQL  240
EAIYGDQSIN QPSVLETYLG RNTLLHTELE SQELNHDHHH DPNKLSESLS FSINNSSEFE  300
TSSSDYNNED RHDHSGIAPV FKMNNTNDHG LIMDQKMKGI IRPRNKSSWK VKVEEFVDSQ  360
MKKIMVTQET WMEKMLKSVI DKEEERVAKE EEWRKQEAAR FDQEVSEFWS KEKAWVEARD  420
AALMGALNKF TSGNKGSSLL ELPPFPERML SRDHITRKDT TSYVNYNNHR WNEEEISSLV  480
ELIRSCNSLE ATSFQGTSVV VWEEIASKMV CLGFDRSAAE CKEKWESLSV YVRMTNECKK  540
NRREDYKTSG TGCYYFDHDR QDNREGYHHD QDQSLKQGHD HQRIMGLQLM DEGLSPSSNS  600
NVGTSQMHPS NCFHLLFGEG ENLWEKYGTM KLSKDKINQL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.16e-90Trihelix family protein