PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON84273.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

bHLH

Protein Properties

Length: 494aa MW: 54153.8 Da PI: 6.9566

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON84273.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.1	1.3e-07	397	437	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P K++ a++L +A Y+k L PON84273.1 397 ARQRRERISERIRVLQRLVPGG-----SKMDTASMLDEAASYLKFL 437 69****************95.....5**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence
MDGDLGWGHG TVQAGTSTSS ALWSNHDHQR EIEQGFLVSN SSSGNSTIAV PQLHKAAHQK 60 LSSSPMVNNS SSVDIISNLS FSHGQEAMSS IVNVKSGATT TTWGQSTLTA RDFCSSPYNI 120 INPFSDFMSG TPTGFGNINN VQSQVVVNGK APVTTTTCSD LESLDCLLSA TNSNTDTNSV 180 EDDGISMIFS DCRNFWNNIN GAGGAVSSGE SENNNNKVSR DKGMDDNCQL TNHEVDETVS 240 QSTTSDRGVH IAQSQTKSTH HMSNHHKTNS MKRNNDDRQN YDNNMSFFNL LQSDMSHTTK 300 EGQGFRLILE NSLPKPKKPR SEKRPPSSSN INFQQPSNSS ISNSSVDQEP DPEAIAQMKE 360 MIYRAAAFRP VNLGLDVVEK PKRKNVRIST DPQTVAARQR RERISERIRV LQRLVPGGSK 420 MDTASMLDEA ASYLKFLRSQ VKALESLGQK IDSMNCPPTN IAFSFNPSFP MQTHVPSPPL 480 LQLQNPNQVH HYQS

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence

MDGDLGWGHG TVQAGTSTSS ALWSNHDHQR EIEQGFLVSN SSSGNSTIAV PQLHKAAHQK  60
LSSSPMVNNS SSVDIISNLS FSHGQEAMSS IVNVKSGATT TTWGQSTLTA RDFCSSPYNI  120
INPFSDFMSG TPTGFGNINN VQSQVVVNGK APVTTTTCSD LESLDCLLSA TNSNTDTNSV  180
EDDGISMIFS DCRNFWNNIN GAGGAVSSGE SENNNNKVSR DKGMDDNCQL TNHEVDETVS  240
QSTTSDRGVH IAQSQTKSTH HMSNHHKTNS MKRNNDDRQN YDNNMSFFNL LQSDMSHTTK  300
EGQGFRLILE NSLPKPKKPR SEKRPPSSSN INFQQPSNSS ISNSSVDQEP DPEAIAQMKE  360
MIYRAAAFRP VNLGLDVVEK PKRKNVRIST DPQTVAARQR RERISERIRV LQRLVPGGSK  420
MDTASMLDEA ASYLKFLRSQ VKALESLGQK IDSMNCPPTN IAFSFNPSFP MQTHVPSPPL  480
LQLQNPNQVH HYQS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	398	403	RQRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	5e-50	bHLH family protein